Gene Information

Name : fliP (Mpop_0605)
Accession : YP_001923318.1
Strain : Methylobacterium populi BJ001
Genome accession: NC_010725
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 651603 - 652364 bp
Length : 762 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagellum

DNA sequence :
ATGATTCGGCGCCTGTCCCTGGCCGCGATCGTCCTGGGCCTCACCGCCACCGCCGCCGTGGCGCAGGGCGCGGGCGGCGT
CACCGGCGTGCCCGGCCTCGACGCACTGCTGCCGCCCGGCAACGGAGCGGCGTCCGGGCGCATCATCCAGCTCGTCGCGC
TGCTGACGGTGCTGTCGCTGGCGCCGGGCCTGCTCGTGATGATGACGAGCTTCACGCGCTTTGCCGTCGCCTTCTCGTTC
CTGCGCTCGGGGCTCGGCCTGCAGAGCACGCCGGCCAACCTGTTCCTCGTCTCGCTCGCCCTGTTCATGACCTTCTACGT
CATGGCGCCGACCTTCGACCGGGCCTGGAACGAGGGCGTGAAGCCGCTGCAGGAAAACCGCATCGGCGAGGAGGAGGCGT
TCGGGAAGATCGTCGAGCCGTTCCGGGAATTCATGACCCAGCACGTGCGCCCGAAGGATCTTCAGACGTTTACGGACTTG
GCGAGCCGCAACTTCCCGAAGGCGGAAGCCGGGGAGAAGATCGACCTGCGCATCCTGATCCCGGCCTTCATGATCTCGGA
GTTGCGCCGGGGCTTCGAGATCGGCTTCCTGATCGTGCTGCCCTTCCTCGTCATCGACATCATCGTCTCCACCATCGTGA
TGTCGATGGGCATGATGATGCTGCCGCCGACCGTGATCTCGCTGCCGTTCAAGGTGCTGTTCTTCATCCTGATCGACGGC
TGGAATCTGCTGGTGAGCGGGCTGGTGCGGTCATTCTTCTGA

Protein sequence :
MIRRLSLAAIVLGLTATAAVAQGAGGVTGVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMMTSFTRFAVAFSF
LRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRIGEEEAFGKIVEPFREFMTQHVRPKDLQTFTDL
ASRNFPKAEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILIDG
WNLLVSGLVRSFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-33 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-29 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-29 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-29 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-33 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-47 47
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG0394 Protein 2e-34 46
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG2338 Protein 6e-46 45
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-46 44
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-44 43
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG0519 Protein 1e-33 41
fliP YP_001923318.1 flagellar biosynthesis protein FliP VFG0188 Protein 4e-32 41