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Name : nifJ (CLH_0756) Accession : YP_001920151.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Virulence Product : pyruvate:ferredoxin (flavodoxin) oxidoreductase Function : - COG functional category : C : Energy production and conversion COG ID : COG0674 EC number : 1.2.7.1 Position : 784313 - 787813 bp Length : 3501 bp Strand : + Note : identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 DNA sequence : ATGAGAAAAATGAAAACTATGGATGGTAATACTGCAGCAGCTCACGTATCTTATGCGTTTACAGAAGTAACTGCAATATA TCCAATAACACCATCATCACCAATGGCAGAACATGTAGATGAATGGGTTGCACAAGGAAGAAAGAATATATTTGGACAAA CTGTTAAAGTAATGGAGATGCAATCAGAAGCTGGAGCTGCTGGAGCAGTTCACGGTTCTTTACAAGCTGGAGCATTAACA ACTACTTATACAGCTTCACAAGGTTTATTATTAATGATACCAAATATGTACAAGATATCAGGTGAAATGTTACCAGGAGT ATTCCACGTTTCAGCTAGAGCTTTAGCTACATCTTCATTAAACATATTTGGAGATCATCAAGATGTTATGGCAGCAAGAC AAACTGGATTTGCTATGCTTGCTGAAGGATCAGTTCAAGAAGTTATGGATTTATCAGCAGTAGCACATTTAACTGCTATA AAATCTAGAATTCCATTCTTAAACTTCTTTGATGGTTTTAGAACTTCTCACGAAATTCAAAAAATTGAAGTATTAGACTA TGCTGATTTAGCTAAGTTAGTTGATATGGACGCTGTTAAAGCTTTCAGAGCAAGAGCTTTAAATCCAGATCATCCTGTAA CTAGAGGAACAGCTCAAAATGCTGATATCTATTTCCAAGAAAGAGAATCAGTAAATAAATTCTACAATGAATTACCAGAT ATGGTTGAAAGCTATATGGCTGAAATCACTAAAATAACTGGTAGAGAATATCATTGTTTCGACTACTATGGTGCTGAAGA TGCAGACAGAGTAGTTATAGCAATGGGTTCAGTAACAGATGTAGCTGAAGAAACTGTAGATTACTTAAATGCACATGGAC AAAAAGTTGGTCTTGTTAAAGTAAGACTTTACAGACCATTCTCAGTTGAAAAATTAATAGCTGCTATTCCAAGCACTGTT AAGAAAATCGCTGTTTTAGATAAGACTAAAGAACCAGGTGCTGACGGAGAACCATTATACTTAGATATTAGAAATGCATT CTACGGAAAAGAAAATGCTCCTGTTATAATTGGCGGAAGATTTGGTTTAGGATCAAAAGATCCAAATCCAGCTCATATTG CTGCTGTTTATGATAACTTAGCAAAAGCTGAACCAAAGAATGGATTCACTATAGGAATAGTTGATGACGTTACAAATACT TCATTAGAAGTAACTGAAGATATAGATGCTACTCCAGAAGGAACTACAGCTTGTAAGTTCTGGGGATTAGGATCAGATGG TACTGTTGGAGCAAACAAGAGTGCTATAAAGATCATTGGAGATCATACAGACATGTATGCTCAAGGATACTTCTTCTATG ATTCAAAGAAATCAGGCGGAATTACAGTATCTCACTTAAGATTTGGTAAGAAGGCAATTAAGTCTCCATACTTAATCAAC AAAGCAGATTTCGTATCTTGTTCTAATCAATCATACGTTCATAAATATAACGTATTAGAAGGATTAAAACCAGGAGCAAC TTTCTTATTAAATACTATCTGGACTCCAGAAGAATTAGAAGAAAAGTTACCTGCTTCATATAAGAGATTTATGGCAAACA ACAACATTAAGTTCTACACTTTAAATGCTGTTGCTATAGCTCAAGAAATAGGTCTTGGTGGAAGAATCAACATGATAATG CAATCAGCTTTCTTCAAGCTAGCTAACATTATCCCAGTTGAAGACGCTGTTAAATACTTAAAAGACTCAGTTGTAACTTC TTATGGTAAGAAGGGTGAAAAAGTTGTTAATATGAACAACGCAGCAATCGATAAGGGTGTTGAATCTATCGTTGAAATCA AACTTCCAGAAGCTTGGAAGACTGCTAAAGACGAAGAAGTAGCTCCACTTAAGAATGCTTCAGAATTCGTTAAGAATATA GTTGTTCCAATGAACAGACAAGAAGGAGATTCTCTTCCAGTTTCTGCTTTTGTTGGAATGGAAGATGGTACATTTGAAGC TGGTACTGCAGCCTTCGAAAAGAGAGGAATCGCAGTTAACGTTCCTGAATGGGATGCTGAAAAATGTATTCAATGTAACC AATGTTCATTAGTATGTCCACATGCTGCTATCAGACCAATATTATTAAATGAAGCAGAAAAGAATGCTGCACCTGCTAAT GCAACAATAGTTGATGCTAAAGCTCTTAAGAGTGAAGAAAAATTATTCTACACTATGGCAGTAGCACCACTTGATTGTTC AGGTTGTGGAAACTGTGCTCAAATTTGTCCTGCACCAGGAAAAGCATTAGTTATGAAACCACAAGAAAGCCAACACAATC AAATTGAAGTTTGGGATTACTTAGTAGATGAAGTATCAACTAAAAAGAACCCAATGAATAAGAATACAGTAAAAGGTAGC CAATTTGAGCAACCATTACTTGAATTCTCAGGAGCTTGTGCTGGTTGTGGAGAAACTCCATACGCTAAGCTTATAACTCA ATTATTTGGAGATAGAATGATGATCGCTAATGCAACTGGATGTTCATCAATCTGGGGTGGATCTGCACCTTCAACTCCAT ACACTAAGAATAAAGAAGGACATGGTCCAGCTTGGGCTAATTCATTATTCGAAGATAATGCTGAATACGGATTAGGTATG TTCTTAGGAGTAAGAGCTATAAGAGAAAGAATCCAAGAAAGAGCAGAAGCTGCTATAGCTGCAAATGATCCAGCTAAAGC TGAATTACAAGATTGGTTAGAAAATATGAACGAAGGTGCTGGAACTAGAGATAGAGCTGCTAAATTAGTTGCTGCTTTAG AAAAATCTGGTACAGAAGCTGCTAAAGAAATTTTAGCTGAAAAAGACTACTTCGTTAAGAGATCTCAATGGATCTTCGGA GGAGACGGATGGGCTTACGACATCGGATACGGTGGAGTTGACCACGTACTTGCTTCAGGAGAAGATGTAAATGTATTTGT ATTTGATACAGAAGTTTACTCAAACACAGGTGGACAATCTTCTAAATCTACACCAACAGCTGCAATAGCTAAATTCGCTG CTGCAGGTAAGAGAACTAAGAAGAAAGACCTTGGAATGATGGCTATGACTTACGGTTACGTATATGTAGCTCAAATCAAT ATGGGAGCTGATAGAAATCAAGTTCTTAAAGCTATTGCAGAAGCAGAAGCTTACAAGGGACCATCATTAATCATAGCTTA TGCTCCATGTATAAACCATGGAATTAAGCTTGGTATGAGCAACAGCCAATTAGAAGCTAAGAGAGCAACTGAATGTGGAT ACTGGGCAATGTACAGATTTAACCCAGAATTAAAGGGAACTAAGAACCCATTCACATTAGATTCTAAAGCTCCAACTGCT GACTTTAAAGAATTCTTAATGGGTGAAGTAAGATACGCTTCACTTGCTAAAGCATTCCCAGAAGCTGCAGAAGCATTATT TGAAAAGACTTATACTGATGCTATGGAAAGATTAGAAGGATACAAGAAATTAGCTGAATAG Protein sequence : MRKMKTMDGNTAAAHVSYAFTEVTAIYPITPSSPMAEHVDEWVAQGRKNIFGQTVKVMEMQSEAGAAGAVHGSLQAGALT TTYTASQGLLLMIPNMYKISGEMLPGVFHVSARALATSSLNIFGDHQDVMAARQTGFAMLAEGSVQEVMDLSAVAHLTAI KSRIPFLNFFDGFRTSHEIQKIEVLDYADLAKLVDMDAVKAFRARALNPDHPVTRGTAQNADIYFQERESVNKFYNELPD MVESYMAEITKITGREYHCFDYYGAEDADRVVIAMGSVTDVAEETVDYLNAHGQKVGLVKVRLYRPFSVEKLIAAIPSTV KKIAVLDKTKEPGADGEPLYLDIRNAFYGKENAPVIIGGRFGLGSKDPNPAHIAAVYDNLAKAEPKNGFTIGIVDDVTNT SLEVTEDIDATPEGTTACKFWGLGSDGTVGANKSAIKIIGDHTDMYAQGYFFYDSKKSGGITVSHLRFGKKAIKSPYLIN KADFVSCSNQSYVHKYNVLEGLKPGATFLLNTIWTPEELEEKLPASYKRFMANNNIKFYTLNAVAIAQEIGLGGRINMIM QSAFFKLANIIPVEDAVKYLKDSVVTSYGKKGEKVVNMNNAAIDKGVESIVEIKLPEAWKTAKDEEVAPLKNASEFVKNI VVPMNRQEGDSLPVSAFVGMEDGTFEAGTAAFEKRGIAVNVPEWDAEKCIQCNQCSLVCPHAAIRPILLNEAEKNAAPAN ATIVDAKALKSEEKLFYTMAVAPLDCSGCGNCAQICPAPGKALVMKPQESQHNQIEVWDYLVDEVSTKKNPMNKNTVKGS QFEQPLLEFSGACAGCGETPYAKLITQLFGDRMMIANATGCSSIWGGSAPSTPYTKNKEGHGPAWANSLFEDNAEYGLGM FLGVRAIRERIQERAEAAIAANDPAKAELQDWLENMNEGAGTRDRAAKLVAALEKSGTEAAKEILAEKDYFVKRSQWIFG GDGWAYDIGYGGVDHVLASGEDVNVFVFDTEVYSNTGGQSSKSTPTAAIAKFAAAGKRTKKKDLGMMAMTYGYVYVAQIN MGADRNQVLKAIAEAEAYKGPSLIIAYAPCINHGIKLGMSNSQLEAKRATECGYWAMYRFNPELKGTKNPFTLDSKAPTA DFKEFLMGEVRYASLAKAFPEAAEALFEKTYTDAMERLEGYKKLAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFJ97267.1 | pyruvate ferredoxin | Virulence | Not named | Protein | 0.0 | 59 |
