|
Name : CLH_3055 (CLH_3055) Accession : YP_001922432.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein TapB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3287792 - 3289480 bp Length : 1689 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : ATGGCAATTGAGAAAAAAAGATTAGGAAATATTCTTATAAATGCTGGTAAAATAAATAGTTATCAATTACAAGAAGCTCT AAAATCTCAAAAAATTCTTGGTAAAAAATTGGGTGAAATATTAGTAGATAGTAATATCATTACAGAAGAAGAGATAATAG AATCTATTGAACAACAAACAGGAATAAAGAAGGTAGATTTAAATACAATAACTTTTGATAATAAATCAATAGCTATAATA CCTAAAAACTTATGTAGCAAATATTCACTAATACCTTTCGGATTTGATAATAATAAAATAAAAGTAGCTATGTCAGATCC TCTTAATATTTATGCAATAGATGATGTTGCAATTTCAACAGGTTTTGAAATAGAAACCTTCATATCTAAAAAGAATGACA TAAAAAAATTCATAGAAATATATTATAGTAGTCAACAAGTTAGTATGGCTGCACAACAGCTAGCTAAAGAAAGTTCAGAG TCAAAAAGAAATAATATTGTAAATATTGAAGAGATTGATGATGTAAAGAATGCACCCGTTGTAAAGATGGTTGAATATCT ATTTAAAAATTCAATAGAAATGAATGCATCAGACATACATATAGAGCCATTTGAGAATGAGATAAGGATAAGATATAGAA TAGATGGACAACTACAACCAGTAAATATTTTAAATATAGATAGCTTAGGTCCATTAATAACAAGAATAAAAATTCTTGCA GGGCTTAATATAGCAGAAAAAAGAATACCACAGGATGGTAGGATAATAGTTAACATTGGAGAAAAAGATGTAGACCTTAG AGTATCTGTATTACCAGTAGTACATGGAGAAAAGGTAGTTATAAGAATATTAAACACATCTAATTATAATGTAAGTAAGG ACAAATTAGGCATAAATGAAAAAAACTTAAAAAAGATAGATAAGATAATTTCAAATCCATATGGAATAGTATTAGTTACA GGGCCAACAGGAAGTGGAAAATCAACAACATTATACAGCATTTTAAGTGAATTGAATTCTAATAATGTCAATATAGTTAC AGTAGAAGATCCTGTTGAATATACACTTCCAGGGGTTAATCAAGTTAATGTAAATACAAAAGCTGGACTTACATTTGCAA GTGGACTTAGAAGTATATTAAGGCAAGATCCTGATATAGTTATGATTGGTGAAATAAGAGATAATGAAACAGCTGAAATA GCAATAAAAGCAGCAATTACAGGACATTTAGTATTAAGTACACTTCACACTAATGATGCTCCATCATCAATAATAAGACT TATAGATATGGGTATAAAACCTTATTTAGTGTCTACCTCAGTTGTTGGAATATTAGCTCAAAGACTAGTCAGAAAAGTAT GTAATAAGTGCAAAGAATCTTATGAAGCTAGTAAATATGAAAAAGAAATATTAGGTATAGATGAAAATGAAGATTTAAAA TTATATAAATCTTCAGGATGTGGTTACTGTAATAATACAGGTTATTTAGGGAGAATTGGTGTTTATGAAGTTATGGAAAT GACAAGAGATCATAGAGAAGCAATAAATGCTGGGGCTAATTCCGATATATTAAAAGATATTTCATTAAAAAACGGAATGA CAACATTAGGTATGGAATGTAGAGAATTAGTTGTTAAAGGGGTAACTACTATAACAGAACTTGCCACAATAAGTTTATTA AAGGATTAA Protein sequence : MAIEKKRLGNILINAGKINSYQLQEALKSQKILGKKLGEILVDSNIITEEEIIESIEQQTGIKKVDLNTITFDNKSIAII PKNLCSKYSLIPFGFDNNKIKVAMSDPLNIYAIDDVAISTGFEIETFISKKNDIKKFIEIYYSSQQVSMAAQQLAKESSE SKRNNIVNIEEIDDVKNAPVVKMVEYLFKNSIEMNASDIHIEPFENEIRIRYRIDGQLQPVNILNIDSLGPLITRIKILA GLNIAEKRIPQDGRIIVNIGEKDVDLRVSVLPVVHGEKVVIRILNTSNYNVSKDKLGINEKNLKKIDKIISNPYGIVLVT GPTGSGKSTTLYSILSELNSNNVNIVTVEDPVEYTLPGVNQVNVNTKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEI AIKAAITGHLVLSTLHTNDAPSSIIRLIDMGIKPYLVSTSVVGILAQRLVRKVCNKCKESYEASKYEKEILGIDENEDLK LYKSSGCGYCNNTGYLGRIGVYEVMEMTRDHREAINAGANSDILKDISLKNGMTTLGMECRELVVKGVTTITELATISLL KD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 5e-78 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-78 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CLH_3055 | YP_001922432.1 | type IV pilus assembly protein TapB | VFG0233 | Protein | 3e-78 | 47 |
| CLH_3055 | YP_001922432.1 | type IV pilus assembly protein TapB | VFG1876 | Protein | 2e-84 | 45 |
| CLH_3055 | YP_001922432.1 | type IV pilus assembly protein TapB | VFG0182 | Protein | 2e-81 | 43 |
| CLH_3055 | YP_001922432.1 | type IV pilus assembly protein TapB | VFG2048 | Protein | 6e-80 | 41 |
