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Name : smpB (CLH_2802) Accession : YP_001922179.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2969489 - 2969959 bp Length : 471 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAGAAAAAAAAGTTCGAATACTTTAGCAGAAAATAGAAAAGCAAGACATGAGTATTTTATAGAAGAAACTATTGA AGCTGGTATTGCATTAGTTGGAACAGAAGTAAAATCTATTAGAAATGGTAGAGCTAATTTAAAAGAATCTTATGCAGATA TCAGAAATGGTGAAATTTTTATATTAAGCATGCATATAAGTCCATATGAACAAGGCAATATATTTAATGTTGAGCCTTTA AGAGAAAAAAAATTATTATTACACAAGTCAGAAATTCACAGACTAGCAGGTTTAGTATCTAGAGATGGATATACTTTAAT TCCATTAACATTATACTTAAAAGCTGGAAAAGTTAAAGTTGCGTTGGGTATTTGTAAAGGTAAGAAGGATTATGACAAAA GAGATTCTATGCTAGAAAAAGCTCATAATAGAGAAATGCAAAGAGCCTTGAAAGAAAGAAGTAGATATTAG Protein sequence : MVRKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIFILSMHISPYEQGNIFNVEPL REKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKVALGICKGKKDYDKRDSMLEKAHNREMQRALKERSRY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-40 | 60 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 8e-29 | 49 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 4e-30 | 46 |
