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Name : nifJ (CLH_2077) Accession : YP_001921458.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Virulence Product : pyruvate:ferredoxin (flavodoxin) oxidoreductase Function : - COG functional category : C : Energy production and conversion COG ID : COG0674 EC number : 1.2.7.1 Position : 2238940 - 2242458 bp Length : 3519 bp Strand : - Note : identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 DNA sequence : ATGATGAGAAGAACTAAAACGATGGATGGAAATACTGCTGCAGCACATATATCTTATGGATTTACAGAAGTAGCGGCTAT TTACCCAATAACACCTTCATCACCAATGGCAGAACATGTTGATGAATGGGCATCTCAAGGAAGAAAAAACATATTTGGAG AGCCGGTTAAAATGGTTGAAATGCAATCAGAAGCAGGTGCAGCAGGTGCTATGCATGGTTCACTTCAAGCAGGCGCATTA ACAACAACTTATACAGCATCACAAGGATTATTACTTATGATACCTAATATGTATAAAATAGCGGGGGAGAAATTACCTTG TGTTATGCATGTTTCTGCTAGAGCACTTGCTACATCTTCATTAAGTATTTTTGGAGATCATCAAGATGTTATGGCAGCAA GACAAACAGGTTTTGCTATGCTTGCAGAAACCTCTGTGCAAGAAGTTATGGACTTGTCAGGAGTTGCTCATTTAGCGGCT ATAAAAGGAAAAATACCATTTGTAAACTTTTTTGATGGATTTAGAACATCTCATGAAATTCAAAAGATTGAAGTTATTGA ACAAGACGAGTTAGCTAAATTGGTTGATTATAATGCAATTGATGAATTTAGAAAAAACTCATTAAACCCTAATCATCCAG TAACGAGAGGTACTGCTCAAAATCCGGATATATATTTTCAAACAAGAGAAGCGGTAAATAAGGCTTATGATGATGTTCCA TCTATAGTAGAAGAATATATGAGTGAGATAACTAAACTTACTGGTAGGGAATATCATTGTTTTGATTATTATGGAGCAAA AGATGCTGATAGAATAATAATATCAATGGGATCTGTCAATGATGTGGTTGAAGAAACAGTTGACTACTTAAATAATAATA AACAAAAAGTAGGTTTGGTGAAGGTTAGATTATATAGACCGTTTTCAGTAGAAAGATTATTAAAAGTAATACCAAAAAGC GTTAAGAAAATAGCGGTCTTAGATAGAACAAAAGAACCAGGAGCAATAGGTGAACCATTATATTTAGATGTGGTTAGGTG TTTATATGGTAAAAAAGACGCACCTATTATTGTTGGAGGAAGATTTGGATTAGGATCTAAAGATCCAACACCTTCACACA TTGCAGCTGTTTTTGATAATTTAATTAGTGATGAACCTAAGAATCAATTTACTATAGGAATAACTGATGATTTAACTAAT ACATCATTAAAATTACATGAAGATATTAATGCAACACCAGAAGGAACTACTTCTTGTAAGTTCTGGGGATTAGGATCAGA TGGTACTGTTGGAGCTAATAAGAGTGCTATAAAAATCATAGGAGATCATACTGATATGTATGCTCAAGGATACTTTGATT ATGATTCTAAGAAATCTGGTGGTATTACAGTTTCTCACTTAAGATTTGGAAAAGAACTTATAAAATCAAGATATTTAATA GATAAAGCAGATTTTATTGCATGCCATAATCAATCATATGTTTATAAATATAATGTATTAAAAGGATTAAAAAAGAATGC TAGATTTTTATTAAATACTATATGGGATAAAGATGAATTAGACGAAAAATTACCTGCAAGTATGAAAAAATTTATTGCAG AGAACGACATAGAATTTTATACAATAAATGCTATTAAAATAGCTCAAGAAATTGGTCTTGGTGGAAGAATAAATATGATA ATGCAAGCGGCATTTTTTAAGATAACTAATATTATACCAGTTGAAGATGCAGTTAAATACTTAAAAGAAGCAGTTGTGAA TTCATATGGTAAAAAGGGTGAAAAAGTAGTTAGAATGAACAATGATGCCATTGAAGCTGGTGTTGAAGGCGTAGTAAAAA TAGAAATACCAGCTGGATGGAAAAATTCTATTGATGAAAAGAATGAATTCAGTAAGGATTTACCAGCATTCATAAGAGAA ATAGTAAATCCAATGAATAGATTAGAAGGAGATTCTTTACCAGTATCTACTTTTGTTAAGCACAATCTTGAAGATGGTAC ATTTATGGCTGGAACTACAGCCTATGAAAAACGAGGAATTGCTGTAAATGTTCCTGAATGGTTACAAGATAAATGTATAC AATGTAATCAGTGTTCATATGTCTGTCCACATGCTACAATAAGACCATTTTTATTAAATGAAGAAGAAAAATCAAAAGCA CCATCATCTATTAAACTTATTGAGCCAAAAGCTTTAAAGAGTGATGAAAAATTATATTATTCAATAGGAGTAACACCTCT TGATTGTACTGGATGTGGAAATTGTGTTGAAGTATGTCCAGCACCAGGAAAAGCATTAATTATGAAACCACAAGCGTCTC AACATGATCAAATAGAAGTGTGGGATTATACAGTTGAAAAAGTAACTAATAAAAATCCTATGAATAAAAATACTGTAAAA GGAAGTCAATTTGAAATACCACTTCTTGAATATTCAGGAGCTTGTGCAGGGTGTGGAGAAACACCATATGCTAAACTTAT AACTCAATTATTTGGAGACCGAATGATGATAGCAAATGCTACAGGGTGTTCATCAATTTGGGCTTCAGGAGCTCCGGCTA CAGCTTATACAAAAAATCAACAAGGGCATGGTCCAGCATGGGCAAACTCATTATTTGAAGATAATGCTGAATTTGGTTAT GGTATGCACTTAGGCGTTAAAGCTATAAGAGAAAGAATAGCACATAATATTGAAGTAGCATTAAATTCTGACTTATCTGA AAATACAAAAGAAGTATTAAAAGATTGGTTAGATCATAAAGATTGTGGCGAAGGAACTAGAGATAGATCCAATAAAGTTA TAGAAGTACTTGAAAAAGAAAATAATGAACTTGCAAAAGTTATATTAAAGGATAAGGAATTTTTAGTTAATAGATCTCAA TGGATATTTGGTGGAGACGGTTGGAGTTATGATATAGGATATGGTGGTCTTGATCATGTTATTGCATCAGGAGAAAATGT AAATATATTTATATTTGATACAGAAATATATTCAAATACTGGAGGTCAAGCATCAAAATCTACACCAACAGCTGCAATAG CTAAATTTGCGGCATCAGGAAAGAGAACTAAGAAGAAAGACTTAGGAATGATTGCTATGACTTATGGTTATGTATATGTC GCACAAATAGCCATGGGTGCAGATAAAAATCAAACACTAAAAGCAATATGTGAAGCGGAAAATTATGATGGACCATCATT AATAATTGCTTATGCACCATGTATAAGTCATGGAATAAAAATTGGAATGTCAAATTCTCAAGAAGAAGAAAAGAAAGCAG TTGAATGTGGATATTGGAGTCTTTATAGATATAATCCTACGTTAAAAGGAGTTAAGAATCCATTCTCATTAGATTCAAAA GAACCAAAAGGAAACTTTAGAGAATTCTTAATGGGAGAAGTTAGATATTCTTCACTTGCAAAAGTGTTCCCAGAATTATC AGAAGAATTATTTAAGAAGACAGAAGAAGATGCTATTGAAAGATATAATAATTATAAAAAATTAGCGTCTCAAGAATAA Protein sequence : MMRRTKTMDGNTAAAHISYGFTEVAAIYPITPSSPMAEHVDEWASQGRKNIFGEPVKMVEMQSEAGAAGAMHGSLQAGAL TTTYTASQGLLLMIPNMYKIAGEKLPCVMHVSARALATSSLSIFGDHQDVMAARQTGFAMLAETSVQEVMDLSGVAHLAA IKGKIPFVNFFDGFRTSHEIQKIEVIEQDELAKLVDYNAIDEFRKNSLNPNHPVTRGTAQNPDIYFQTREAVNKAYDDVP SIVEEYMSEITKLTGREYHCFDYYGAKDADRIIISMGSVNDVVEETVDYLNNNKQKVGLVKVRLYRPFSVERLLKVIPKS VKKIAVLDRTKEPGAIGEPLYLDVVRCLYGKKDAPIIVGGRFGLGSKDPTPSHIAAVFDNLISDEPKNQFTIGITDDLTN TSLKLHEDINATPEGTTSCKFWGLGSDGTVGANKSAIKIIGDHTDMYAQGYFDYDSKKSGGITVSHLRFGKELIKSRYLI DKADFIACHNQSYVYKYNVLKGLKKNARFLLNTIWDKDELDEKLPASMKKFIAENDIEFYTINAIKIAQEIGLGGRINMI MQAAFFKITNIIPVEDAVKYLKEAVVNSYGKKGEKVVRMNNDAIEAGVEGVVKIEIPAGWKNSIDEKNEFSKDLPAFIRE IVNPMNRLEGDSLPVSTFVKHNLEDGTFMAGTTAYEKRGIAVNVPEWLQDKCIQCNQCSYVCPHATIRPFLLNEEEKSKA PSSIKLIEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQASQHDQIEVWDYTVEKVTNKNPMNKNTVK GSQFEIPLLEYSGACAGCGETPYAKLITQLFGDRMMIANATGCSSIWASGAPATAYTKNQQGHGPAWANSLFEDNAEFGY GMHLGVKAIRERIAHNIEVALNSDLSENTKEVLKDWLDHKDCGEGTRDRSNKVIEVLEKENNELAKVILKDKEFLVNRSQ WIFGGDGWSYDIGYGGLDHVIASGENVNIFIFDTEIYSNTGGQASKSTPTAAIAKFAASGKRTKKKDLGMIAMTYGYVYV AQIAMGADKNQTLKAICEAENYDGPSLIIAYAPCISHGIKIGMSNSQEEEKKAVECGYWSLYRYNPTLKGVKNPFSLDSK EPKGNFREFLMGEVRYSSLAKVFPELSEELFKKTEEDAIERYNNYKKLASQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFJ97267.1 | pyruvate ferredoxin | Virulence | Not named | Protein | 0.0 | 58 |
