|
Name : CLH_0205 (CLH_0205) Accession : YP_001919641.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/mecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 217541 - 219985 bp Length : 2445 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : TTGAGTATGGATTTTAATAAATTTACAGAAAGAACTCAATCAATAATACTAGAAGCACAAATTGAATCACAAGAATTTAA ACATGGATATGTAGGTACAGAACATTTATTATTGGGTTTAGTAAAAGAAAAAGGAAATCAATCTAAAATATTAAATGAAT TTGGAATTGATGATGAAATAGTAAGAGATATGATAAGTAGATATTTGGGCTATGGTGAATTACAAATGCCTGAAGATGAT ATATTGTTAACACCTAGAGCAAAAAGACTTCTTGATGAAAGCTTTATAGAGGCTAAAAAATTTAGTCATAAAAATGTTAG CCCAGAACATATATTAATGGCATTACTTAATCAAGAAGAAGGAATGGCATATACTATATTAAAAAATTTAAAATTAGATT TCAAAGAAATAAAAGATAAATTGTTTGTATTTTTAAATGGTCAGTATGTAGATGAAAATGAAGAAGTTAAGTCTCCAAAA TCAGAAAAAAATAAAACGCCTATGTTAGATAAATACGGACGAGATTTAACTCAATTTGCAAGAGATGGTGGATTAGATCC TGTTATTGGAAGAGATTCAGAAAATCAAAGGGTTTTAGAAATATTATGTAGAAGAATAAAAAACAATCCTTGTTTAATAG GTGAACCAGGAGTTGGAAAAACAGCAGTAATTGAGGGATTAGCACAGAGAATTGTAGAAGGTAATATCCCTGAAATACTA AGAGATAAGAGAATAGTTTCTCTTGATCTAACGGCATTACTTGCAGGTGCTAAATATAGAGGGGAATTTGAAGATAGATT AAAGAAGGTAATGCTTGAAATAGAAAAAGATAAAAGCATTATAATATTCATAGATGAGATTCATACAATAATAGGTGCAG GTGCAGCAGAAGGTGCAATAGATGCTTCAAATATATTAAAGCCAGCACTTTCTAGAGGACAAATTCAATGTATAGGTGCA ACAACTATAAATGAATATAGAAAACATATAGAAAAGGATTCTGCATTAGAAAGAAGATTTCAACCAGTAAATGTTGGTGA GCCATCAAAAGATGAAACACTAATAATACTAAAGGGATTAAGAGTAAAGTATGAAGAGCATCATAATGTTAATATTACAG AAAAAGCATTGGAAGCTGCTGTAGATTTATCTGATAGATATGTTACAGACAGATTTATGCCAGATAAAGCTATTGATTTA ATTGATGAGGCATGTGCTAAAGTTAGAATAAAAAATTTAATTCCTCCTACTAATTTAAAATCAATGGAAGACAAAATTAA AGAGATAACTAAGGAAAAAGAAGAGTGTATTAGAGTTCAAGATTTCGAAAAAGCAGCAGATATGAGGGATATTGAAAATA ATTTAAAAGAAGAATTAGAGGCATTAAGAAAAGAATGGAGTGACAAAAATTCTAATAAATTATTGAATGTAGATGAGGAA GATATAGCAGAAGTTGTATCAGCGTGGACTAAAATACCAGCTAAAAAGCTTACAGAAAAAGAGAGTGAAAAATTATTAAA GCTTGAAAATATACTTGAAAAAAGAGTTATAGGTCAAACAGAAGCTGTTGAATCTATAGCTAAAGCTGTAAGAAGAGCTA GAGTTGGGATAAAAGATCCTAATAGACCAATAGGAACATTTATATTTTTAGGACCTACAGGTGTTGGTAAAACAGAACTT TCAAAGGCGTTAGCTGAAGCTATGTTTGGAGATGAAAACAGTATAATAAGAATAGATATGTCAGAATATATGGAAAGCAA TTCAGTTTCTAAATTAATAGGTTCTCCTCCAGGTTATGTAGGATATGATGATGGTGGTCAATTAACAGAGGCTGTTAGAA GAAAGCCTTATTCTGTAGTACTTTTAGATGAAATTGAAAAAGCTCATCAAGATGTATTTAATATATTGCTTCAAATTATG GAGGATGGAAGACTTACAGATTCTCATGGAAAAGTAGTTAATTTTAAAAACACAATAGTTATAATGACTTCTAATGTAGG AGCACATCAAATAAAGAAACAAAAAGCAATTGGATTTAATACAAGTGTTGATGAGAATTCGGAATATGAAAAGATGAAAG ATAATGTTTTAGAAGAATTAAAGAGAAGCTTTAAACCGGAATTCTTGAATAGAATAGATGATACTATAGTATTCCATAAA TTAAAAGAAGAGGATCTCTTAGATATAGTTGATTTAATGTTAAAATCTATTACCAAAAGACTTGAAAATAAAAATATACA CTTAAATTTTGAAAAAGATAGTAAGAAATTCTTAATTAACAAAAGAGTTGATTTAAATTATGGGGCAAGACCATTAAGAA GAATTATTACTAAAGAAGTAGAAGATAAATTAAGTGAAGAGATACTTTTAGGTAATATAAAAATTGGAGATAGAATCAAA GTAAATGAATCAAAAGATAATTTGGTTTTTACAAAATTAGATTAA Protein sequence : MSMDFNKFTERTQSIILEAQIESQEFKHGYVGTEHLLLGLVKEKGNQSKILNEFGIDDEIVRDMISRYLGYGELQMPEDD ILLTPRAKRLLDESFIEAKKFSHKNVSPEHILMALLNQEEGMAYTILKNLKLDFKEIKDKLFVFLNGQYVDENEEVKSPK SEKNKTPMLDKYGRDLTQFARDGGLDPVIGRDSENQRVLEILCRRIKNNPCLIGEPGVGKTAVIEGLAQRIVEGNIPEIL RDKRIVSLDLTALLAGAKYRGEFEDRLKKVMLEIEKDKSIIIFIDEIHTIIGAGAAEGAIDASNILKPALSRGQIQCIGA TTINEYRKHIEKDSALERRFQPVNVGEPSKDETLIILKGLRVKYEEHHNVNITEKALEAAVDLSDRYVTDRFMPDKAIDL IDEACAKVRIKNLIPPTNLKSMEDKIKEITKEKEECIRVQDFEKAADMRDIENNLKEELEALRKEWSDKNSNKLLNVDEE DIAEVVSAWTKIPAKKLTEKESEKLLKLENILEKRVIGQTEAVESIAKAVRRARVGIKDPNRPIGTFIFLGPTGVGKTEL SKALAEAMFGDENSIIRIDMSEYMESNSVSKLIGSPPGYVGYDDGGQLTEAVRRKPYSVVLLDEIEKAHQDVFNILLQIM EDGRLTDSHGKVVNFKNTIVIMTSNVGAHQIKKQKAIGFNTSVDENSEYEKMKDNVLEELKRSFKPEFLNRIDDTIVFHK LKEEDLLDIVDLMLKSITKRLENKNIHLNFEKDSKKFLINKRVDLNYGARPLRRIITKEVEDKLSEEILLGNIKIGDRIK VNESKDNLVFTKLD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CLH_0205 | YP_001919641.1 | negative regulator of genetic competence ClpC/mecB | VFG0079 | Protein | 0.0 | 55 |
| CLH_0205 | YP_001919641.1 | negative regulator of genetic competence ClpC/mecB | VFG0080 | Protein | 1e-133 | 50 |
