|
Name : CLH_2008 (CLH_2008) Accession : YP_001921389.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Resistance Product : subtilin biosynthesis regulatory protein SpaR Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 2155571 - 2156233 bp Length : 663 bp Strand : - Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486 DNA sequence : TTGGCTACTATTTTAGCTATAGATGATGAAATAGGAATATTAAATATTATAAAAGTTGCATTAGAAAAAGAAGGACATAT AGTAACTACTGTTTCTAATGCTAATAAAATATCATATAATCAATACACTAAATATGATTTAATACTATTAGATGTAATGA TGCCAGAGATAGATGGATTCACTCTATGCAGTGAAATAAGGAATTTAGTAGATTGTCCTATTTTATTTTTAACAGCAAAG ACTATGGAAGAAGATATAGTTAAGGGGCTTAGTTTTGGCGGAGATGATTATATAACCAAACCCTTTGGAATAAGCGAACT AAGAGCAAGAGTAAATGCACATTTAAGAAGAGAATGCAGAGAAAAGCAAAATGCCTTTTATATTTCTGAACTTAAATTTT ATATAAATGCAAAGGAAGTATATCATGATGATGAATTAGTTCCGTTTACCAAAAGTGAATATAATATATGTGAATATTTA GCATTAAATCATGGACAAGTGTTTTCAAAAGAGCAAATTTATGAAAGTATTTTTGGATTTGATGGTCATAGTGATACAAC AGCTATTGTAGAGCATATTAAAAATATAAGAAGTAAGCTTAAGAAAATAGGTATAAACACAATAGAAACAGTTTGGGGGA TTGGTTACAAGTGGAAAGACTAA Protein sequence : MATILAIDDEIGILNIIKVALEKEGHIVTTVSNANKISYNQYTKYDLILLDVMMPEIDGFTLCSEIRNLVDCPILFLTAK TMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLRRECREKQNAFYISELKFYINAKEVYHDDELVPFTKSEYNICEYL ALNHGQVFSKEQIYESIFGFDGHSDTTAIVEHIKNIRSKLKKIGINTIETVWGIGYKWKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSU05_0907 | YP_001198273.1 | NisR | Not tested | 89K | Protein | 7e-35 | 44 |
| nisR | YP_006309898.1 | NisR | Not tested | FWisland_1 | Protein | 5e-36 | 41 |
| nisR2 | YP_006309922.1 | NisR | Not tested | FWisland_1 | Protein | 7e-36 | 41 |
