Gene Information

Name : CLH_1798 (CLH_1798)
Accession : YP_001921180.1
Strain : Clostridium botulinum Alaska E43
Genome accession: NC_010723
Putative virulence/resistance : Resistance
Product : regulatory protein VanR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1927571 - 1928284 bp
Length : 714 bp
Strand : -
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
GTGAATAATAAGATATTAATAGTAGATGATGAGATTGAAATACTGAAGTTGTTAGAAACTGTATTAAAAAAAGAAGGATT
CAATAATGTATATACAGCTAAAACTTTAAAGGAAGGTTTAGCTGAGTTTAATAGGGTAAAACCAGAGCTAGTTATACTTG
ATATAATGTTGCCTGATGGTGATGGATATGAAATATGTAAAGATATAAGAAGTAAATCTAATGTTCCAATTTTGTTTTTA
TCAGCTAAAACAGAAGAACTAGATAAAATACTAGGTTTTGCAATTGGTGGAGATGATTATATAACTAAACCCTTTAGTCC
TAAAGAAGTTGCATTTAGAGTTAAAGCTCATTTAAGAAGAGTTAATTATAATAATGAAAATTTAAATGAAAATAATACTG
AAGAGAAAATAATAAAATTTGGACCATATGTTTTAAATGAAAGCAGAGCGGAACTAATAAAAAATGGCAAAACAATAGAA
TTAACAGCTAAGGAACTTAAAATTTTATCTTTATTAGCTCACAATCAAAATCAAATAATAAGTAAGGAAAAGCTATGGGA
TAAAGTATGGGGAGAAGATTACTTTGGATTTGATAATACAATAATGGTTCATATAAGAAAGCTAAGAGAAAAAATAGAAG
AGGACTCATCTAATCCTAAATATATTCTTACAGTTAGAGGACTTGGCTATAAATTATCTGTAAAGGAAGATTAG

Protein sequence : 
MNNKILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGYEICKDIRSKSNVPILFL
SAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVNYNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKTIE
LTAKELKILSLLAHNQNQIISKEKLWDKVWGEDYFGFDNTIMVHIRKLREKIEEDSSNPKYILTVRGLGYKLSVKED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sboR YP_006309915.1 SboR Not tested FWisland_1 Protein 9e-39 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLH_1798 YP_001921180.1 regulatory protein VanR NC_005054.2598277.p0 Protein 9e-40 46
CLH_1798 YP_001921180.1 regulatory protein VanR NC_014475.1.orf0.gen Protein 9e-40 46
CLH_1798 YP_001921180.1 regulatory protein VanR AM180355.1.gene1830. Protein 7e-41 46
CLH_1798 YP_001921180.1 regulatory protein VanR AF130997.1.orf0.gene Protein 1e-38 45
CLH_1798 YP_001921180.1 regulatory protein VanR DQ212986.1.gene4.p01 Protein 3e-39 45
CLH_1798 YP_001921180.1 regulatory protein VanR AF155139.2.orf0.gene Protein 3e-39 45
CLH_1798 YP_001921180.1 regulatory protein VanR NC_012469.1.7685629. Protein 5e-40 45
CLH_1798 YP_001921180.1 regulatory protein VanR FJ349556.1.orf0.gene Protein 1e-40 44
CLH_1798 YP_001921180.1 regulatory protein VanR NC_012469.1.7686381. Protein 2e-36 43
CLH_1798 YP_001921180.1 regulatory protein VanR HE999704.1.gene2815. Protein 1e-36 43
CLH_1798 YP_001921180.1 regulatory protein VanR EU250284.1.orf4.gene Protein 2e-35 42
CLH_1798 YP_001921180.1 regulatory protein VanR AF162694.1.orf4.gene Protein 7e-34 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_002952.2859905.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_003923.1003749.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_009641.5332272.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_013450.8614421.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_007622.3794472.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_002745.1124361.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_009782.5559369.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_002951.3237708.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_007793.3914279.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR NC_002758.1121668.p0 Protein 7e-38 41
CLH_1798 YP_001921180.1 regulatory protein VanR AE016830.1.gene1681. Protein 1e-34 41