Gene Information

Name : CLH_1615 (CLH_1615)
Accession : YP_001921001.1
Strain : Clostridium botulinum Alaska E43
Genome accession: NC_010723
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : 3.6.3.-
Position : 1744801 - 1745478 bp
Length : 678 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAACGTTATTAGATTAAATGGAGTATATAAGAGTTATGGAAATGGAGAAAATGAAGTTAAAGCATTAAAAAATATTAA
TTTAGATATAAAAAAGGGAGAGTTTGTATCTATAATTGGTGCATCTGGTTCAGGAAAATCTACACTTTTACATATATTAG
GGGGAATAGATAGGCCGACAGAAGGTGAGATATTTATAGAGGATGTTAATCTTAAGAATTTATCAGAAAATGAGATATCC
TTATTAAGATTAAGAAAGGTTGGTTTTGTGTTTCAATTTTATAATCTAATACCTGTCTTAACAGTGGAAGAAAATATAGA
GATGCCAGTATTATTGGATGATGGTGCTATAGATAAAGATTATAAAAATGAGCTGATTAAGCTATTAGGATTAGAGAATA
AATTAAATAATTTACCTTCAGAATTATCTGGAGGACAACAACAAAGAGTAGCCATAGGAAGAGCACTTGCAAATAGACCA
TCAATAATTTTAGCAGATGAACCAACAGGAAATTTAGATTCAAAAACTGCAATGGATATTATGGAACTTTTAAAGTATTC
AAGAAAAAAATATAATCAAACATTAATACTTATAACTCATGATGAAAGAATTGCAAAAATGGCAGACAGAGTGATTGGAA
TAAAGGATGGAGAAATAGCTATTAATGAGGTGATTTAA

Protein sequence : 
MNVIRLNGVYKSYGNGENEVKALKNINLDIKKGEFVSIIGASGSGKSTLLHILGGIDRPTEGEIFIEDVNLKNLSENEIS
LLRLRKVGFVFQFYNLIPVLTVEENIEMPVLLDDGAIDKDYKNELIKLLGLENKLNNLPSELSGGQQQRVAIGRALANRP
SIILADEPTGNLDSKTAMDIMELLKYSRKKYNQTLILITHDERIAKMADRVIGIKDGEIAINEVI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CLH_1615 YP_001921001.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene598.p Protein 4e-50 53
CLH_1615 YP_001921001.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 2e-49 52
CLH_1615 YP_001921001.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 4e-38 45
CLH_1615 YP_001921001.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7685735. Protein 2e-36 44
CLH_1615 YP_001921001.1 lipoprotein-releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 2e-31 42