|
Name : CLH_1344 (CLH_1344) Accession : YP_001920736.1 Strain : Clostridium botulinum Alaska E43 Genome accession: NC_010723 Putative virulence/resistance : Unknown Product : glycine betaine/carnitine/choline transport ATP-binding protein opuCA Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1125 EC number : - Position : 1431903 - 1432631 bp Length : 729 bp Strand : + Note : identified by match to protein family HMM PF00005 DNA sequence : ATGACTAGAAGAATTATAGAATTTGAAGGTATATGCAAATCATATGGAGATAAGGAAATATTAAAAAATTTAAATTTATG TATAGATAAGGGCGAGTTTTTAACGATAATAGGAAGTTCAGGATGTGGAAAGACAACTCTACTTAAGCTAGTTAATGGTT TAATAATTCCAGATAAGGGGAGAGTATTAGTTTATGGAGAGGATATATCAAAGATTAGTAAAACTGAATTAAGAAGAAGG ATTGGCTATGTTATTCAGGAGGTTGGATTATTCCCGCATATGAATGTAAGAAAAAATATATCTTATGTATTAGATTTAAT AAATAAGGACAATAAAAGAAGCATACAAGAAAGAACTGAATATTTAATAAAATCAGTAGGTCTTAGTAAAGAAATCTTAA ATCGTTATCCAGGAGAACTTTCTGGAGGGCAGCGTCAGCGTATTGGTATTGCAAGAGCTCTAGCAGCTAAGCCTAATATA ATATTAATGGATGAACCTTTTGGAGCAGTGGATGAAATAATGAGAAAACTTTTACAGGAGGAAATTTTACGAATTTATAA TGAGCTTAATGTAACAATTATCTTCATAACTCATGATATTAGGGAGGCTTTAAAGCTTGGGACAAGGGTAATTGTAATGG ATGAAGGTAATATAATACAATCTGGAACGCCAACAGAAATAAGAGAAAATCCAAAAACTATATTTGTAAAAGATCTTATT GGAGCATAA Protein sequence : MTRRIIEFEGICKSYGDKEILKNLNLCIDKGEFLTIIGSSGCGKTTLLKLVNGLIIPDKGRVLVYGEDISKISKTELRRR IGYVIQEVGLFPHMNVRKNISYVLDLINKDNKRSIQERTEYLIKSVGLSKEILNRYPGELSGGQRQRIGIARALAAKPNI ILMDEPFGAVDEIMRKLLQEEILRIYNELNVTIIFITHDIREALKLGTRVIVMDEGNIIQSGTPTEIRENPKTIFVKDLI GA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| opuBA | NP_938494.1 | choline transport system ATP-binding protein | Not tested | Not named | Protein | 8e-48 | 46 |
| opuBA | YP_005124363.1 | choline transport system ATP-binding protein | Not tested | Not named | Protein | 4e-48 | 46 |
