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Name : hrpA1 (PXO_03393) Accession : YP_001911288.1 Strain : Xanthomonas oryzae PXO99A Genome accession: NC_010717 Putative virulence/resistance : Virulence Product : HrpA type III secretion outer membrane pore, YscC/HrcC family Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 80392 - 82167 bp Length : 1776 bp Strand : + Note : - DNA sequence : TTGTTCGCCGTACTGCTGCTCAGCCTGCTGCCGCTGTTCTCGCCACAGGCCGACGCCGCCCAGGTCCCGTGGCATTCGCG CACGTTCAAATACGTCGCCGACAACAAGGATCTCAAAGAAGTGCTGCGTGATTTGTCCGCCAGCCAGTCCATCGCCACCT GGATCTCGCCAGAGGTGACCGGCACGCTGAGCGGCAAATTTGAAACCTCCCCGCAGAAATTCCTCGACGATCTGGCGGCC ACCTACGGCTTTGTCTGGTACTACGACGGCGCCATGCTCAGGATCTGGGGTGCAAACGAATCCAAGAGCGCGACCTTGAG TCTGGGGACTGCATCGACCAAGTCACTGCGCGACGCACTGGCGCGCATGCGCCTGGACGATTCGCGCTTTCCGGTGCGTT ACGACGAGGCCGCGCATGTGGCGGTGGTCTCCGGACCGCCAGGGTATGTGGATACCGTTTCGGCCATTGCCAAGCAGGTC GAGCAGGGCGCCCGTCAGCGCGATGCCACCGAAGTGCAGGTGTTTCAGCTGCATTATGCGCAAGCGGCCGACCACACGAC ACGCATCGGCGGTCAGGACGTGCAGATTCCAGGCATGGCCAGTCTGTTGCGCAGCATATACGGCGCACGCGGCGCGTCGG TTGCGCCGATAGCCGCGTTTGGCGCCAACTTTGGCCGGGTACAGCCGATCGGCGGTGGGTCCTCCAACACATTTGGCAAT GCCGCACAGGGTCAAGGTGGCGGAGCCAGTGGCACCCTTGGGCTGCCTTCGGCCTGGTTCGGCGGGGCCTCGCCGTCCGA TCGCATGCCGGTCAGCCCGCCGTTGCCCGGCAGCGGAGCTGCTGCGGGGTCGCCGGCCAGCGTATGGCCGGAGCTCAGCA AGGGACGGCGCGATGAATCCAATCCGATCGACGCCGGTGGTGGCGCAGAGCTGGCCTCAGATGCGCCGGTGATCGAAGCC GATCCGCGCACGAACGCCATCCTGATCCGCGATCGACCGGAGCGGATGCAGAGCTATGGCACCCTGATCCAACAGCTGGA CAACCGGCCCAAGTTGCTGCAGATCGATGCCACCATCATCGAGATCCGCGATGGCGCAATGCAGGATCTCGGTGTCGATT GGCGCTTCCACAGCCAGCACACCGACATACAGACCGGCGACGGCCGTGGCGGTCAGTTGGGTTTCAACGGCGTATTGAGC GGCGCTGCCACCGATGGCGCGACCACGCCGGTTGGCGGCACCTTGACGGCCGTGTTGGGAGATGCCGGACGTTATCTGAT GACGCGCGTGTCGGCGTTGGAGACGACGAACAAGGCAAAGATCGTGTCTTCGCCCCAGGTTGCGACGCTGGACAACGTCG AAGCGGTCATGGACCACAAGCAACAGGCATTCGTCCGGGTCAGTGGATACGCATCAGCCGATCTTTATAACCTCTCCGCC GGGGTGTCGTTGCGGGTATTGCCCAGCGTGGTGCCAGGCTCGCCGAACGGTCAGATGCGTCTGGATGTGCGTATTGAGGA TGGCCAGCTCGGATCCAACACCGTGGACGGCATTCCGGTCATTACCTCCAGCGAGATCAAGACCCAGGCTTTCGTCAATG AAGGCCAAAGTCTGCTGATTGCAGGATACGCCTACGATGCCGACGAGACCGATCTGAATGCGGTACCGGGTCTGTCAAAG ATTCCGTTGCTCGGTAATCTGTTCAAGCACCGCCAAAAAAGCGGGTCACGCATGCAACGGCTGTTTCTGTTGACCCCACA TGTGGTGTCGCCCTGA Protein sequence : MFAVLLLSLLPLFSPQADAAQVPWHSRTFKYVADNKDLKEVLRDLSASQSIATWISPEVTGTLSGKFETSPQKFLDDLAA TYGFVWYYDGAMLRIWGANESKSATLSLGTASTKSLRDALARMRLDDSRFPVRYDEAAHVAVVSGPPGYVDTVSAIAKQV EQGARQRDATEVQVFQLHYAQAADHTTRIGGQDVQIPGMASLLRSIYGARGASVAPIAAFGANFGRVQPIGGGSSNTFGN AAQGQGGGASGTLGLPSAWFGGASPSDRMPVSPPLPGSGAAAGSPASVWPELSKGRRDESNPIDAGGGAELASDAPVIEA DPRTNAILIRDRPERMQSYGTLIQQLDNRPKLLQIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLS GAATDGATTPVGGTLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASADLYNLSA GVSLRVLPSVVPGSPNGQMRLDVRIEDGQLGSNTVDGIPVITSSEIKTQAFVNEGQSLLIAGYAYDADETDLNAVPGLSK IPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | YP_198733.1 | hypothetical protein | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrpA | BAB07849.1 | HrpA | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrpA | AAC95122.2 | HrpA | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrcC | NP_640770.1 | HrcC protein | Virulence | Hrp PAI | Protein | 0.0 | 96 |
| hrpA1 | AAB08464.1 | HrpA1 | Virulence | Hrp PAI | Protein | 0.0 | 96 |
| hrcC | YP_362166.1 | HrcC protein | Virulence | Hrp PAI | Protein | 0.0 | 96 |
| hrcC | AAP34336.1 | HrcC | Virulence | Hrp PAI | Protein | 0.0 | 95 |
| XC_3003 | YP_244071.1 | HrcC protein | Virulence | Hrp PAI | Protein | 0.0 | 84 |
| hrcC | NP_636613.1 | HrcC protein | Virulence | Hrp PAI | Protein | 0.0 | 84 |
