Gene Information

Name : hrcV (PXO_03403)
Accession : YP_001911277.1
Strain : Xanthomonas oryzae PXO99A
Genome accession: NC_010717
Putative virulence/resistance : Virulence
Product : protein HrcV
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 71428 - 73314 bp
Length : 1887 bp
Strand : -
Note : -

DNA sequence : 
GTGGCGATCGCCGCCTTGGTGGTGGCGGTCATCGGGCTGATGATCCTGCCCCTGCCAACGCCCATGATCGATACGCTACT
GGGCATCAACATCACCCTGAGCGTGGTGCTGTTGATGGTCACGATGTATGTGCCCGACTCGATCTCACTCTCGTCGTTTC
CTTCCCTGCTGCTGTTCACCACCCTACTGCGGTTGTCCTTGAATATCGCTTCGACGAAGTCGATCCTTCTGCATGCCGAG
GCGGGCCATATCATCGAGAGCTTTGGCGAGTTGGTGGTCGGCGGCAATCTGGTGGTGGGCCTGGTCGTTTTCTTGATCAT
CACCACCGTGCAGTTCATCGTGATCGCAAAGGGCTCCGAGCGCGTTGCCGAGGTCGGTGCGCGCTTTACGTTGGACGCAA
TGCCCGGCAAGCAGATGAGTATCGATGCCGACCTGCGTGGCGGCAACTTGACCGCAGATGAGGCACGCCGCAAACGCGCG
CGGCTGGCCATTGAAAGCCAACTGCACGGCGGCATGGATGGCGCCATGAAATTCGTCAAGGGTGATGCGATCGCCGGCCT
GGTGATCACCATGGTCAACATCCTGGCCGGCATCGTGGTCGGCGTGACGTACCACGGCATGACGGCGGGCGACGCCGCTA
ACCGCTTTGCGATTCTGTCGGTGGGCGATGCCATGGTGTCGCAGATCGCCTCACTGCTGATATCGGTGGCTGCCGGCGTC
ATGATCACCCGCGTGGCCAATGAAAACGAGACCAGGCTCAGCTCGCTCGGGCTCGATATCGGCCGTCAGCTCACCAGCAA
CGCGCGAGCGCTGATGGCAGCGAGCGTGCTGCTGGCCTGCTTTGCATTCGTCCCTGGCTTTCCGGCCGTGCTGTTCCTGC
TGCTGGCAGCGGCCGTCGGCGCCGGCGGCTATGCGATCTGGCGCAAGCAACGCGACATCAGCGGCAACGATCAGCGCAAG
TTGCCTTCGACGAGCCGTAAAGGTGCCAAAGGCGAGGCGCCACATATTCGCAAAACCGCTCCTGACTTCGCCTCACCGTT
GTCGATGCGGCTGTCGCCGCAGCTGGCTGCTCTGCTCGACCCCGCGCGGCTGGATCAGGCGATCGAAAGCGAGCGCCATC
AATTGGTCGAGTTGCTGGGCTTGCCGTTTCCCGGGATTGCGATATGGCAGAGCGAGTCGCTGCAAGGCATGCAATACGAG
GTGTTGATTCACGATGTCCCCGAGACACGCGCCGAACTGGAGAACACGGAGGACATGCAGGGAGCACTGGCCCGGCAGGC
CATCGCGCCCCTGCATGCACGGGCGCACTTGTTCGTCGGCATCCAGGAGACGCAGTGGATGCTGGAGCAGGTGGCTGCGG
ACTATCCCGGGCTGGTTGCGGAGGTCAACAAGGCGATGCCCGCCCAGCGCATTGCCGATGTGTTGCGGCGTCTACTGGAA
GAAAGGATTCCGGTGCGCAATATCAAGAGCATTCTGGAGAGTCTGGTGGTATGGGGGCCGAAGGAAAAGGATCTTCTGAT
GTTGACCGAATATGTGCGCTGCGACCTCAGCCGTTATCTTGCGCATACCGCCACCGCAGGCACCGGGCAGCTGCCCGCAG
TGATGCTCGACCACGCTGTCGAACAATTGATCAGGCAATCGATTCGCGCGACCGCGGCCGGCAATTTCCTGGCACTTCCG
CCCGAGCAGGCGAACCAGCTTGTCGAACAGGTGGAACGCATCGTTGGCGGTCAGGCGCAGCATCCGATGGCGGTGGTCGC
GTCGATGGACGTGCGCAGATATGTACGCCGCATGATCGAAGCACGGCTGACGTGGCTGCAGGTCTATTCGTTCCAGGAGC
TGGGTTCGGAGGTACAGCTGCAGCCGATCGGTAGAGTGGTGGTGTGA

Protein sequence : 
MAIAALVVAVIGLMILPLPTPMIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLNIASTKSILLHAE
AGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRGGNLTADEARRKRA
RLAIESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMTAGDAANRFAILSVGDAMVSQIASLLISVAAGV
MITRVANENETRLSSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPAVLFLLLAAAVGAGGYAIWRKQRDISGNDQRK
LPSTSRKGAKGEAPHIRKTAPDFASPLSMRLSPQLAALLDPARLDQAIESERHQLVELLGLPFPGIAIWQSESLQGMQYE
VLIHDVPETRAELENTEDMQGALARQAIAPLHARAHLFVGIQETQWMLEQVAADYPGLVAEVNKAMPAQRIADVLRRLLE
ERIPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLSRYLAHTATAGTGQLPAVMLDHAVEQLIRQSIRATAAGNFLALP
PEQANQLVEQVERIVGGQAQHPMAVVASMDVRRYVRRMIEARLTWLQVYSFQELGSEVQLQPIGRVVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 0.0 100
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 0.0 100
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 0.0 98
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 0.0 98
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 0.0 98
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 0.0 95
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 0.0 95
lssD AAO18050.1 LssD Virulence TTSS locus Protein 3e-98 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcV YP_001911277.1 protein HrcV VFG0064 Protein 7e-104 44
hrcV YP_001911277.1 protein HrcV VFG0198 Protein 5e-91 42
hrcV YP_001911277.1 protein HrcV VFG0384 Protein 1e-95 41