Gene Information

Name : PXO_01511 (PXO_01511)
Accession : YP_001914412.1
Strain : Xanthomonas oryzae PXO99A
Genome accession: NC_010717
Putative virulence/resistance : Virulence
Product : VI polysaccharide biosynthesis protein VipA/tviB
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 3408160 - 3409452 bp
Length : 1293 bp
Strand : -
Note : -

DNA sequence : 
ATGTCCGGCCACACGCATCTCTCACCGCCACCAGGGCGCATCGCCGTCATCGGCTTAGGCTATGTCGGCCTGCCGCTGGC
GGTTGCATTCGGTGAGCAGCGCGACACCCTGGGCTTCGACATCGATGCGCAGCGTGTTGCGCAATTGCGCGATGGCCACG
ATGCCACGCTGGAACTGGACGAGACCGAGTTGGCTGCGGCAACGCAGGTGCGCTACGCCGCAGACGCGGCGGACCTGGCC
TCGTGCAGCATCTTCATCGTGACCGTGCCGACGCCGATCGACAGCTTCGAGCAACCGGATCTGGAGCCGCTGCGCAGTGC
CACTGCGTTGATTGCTGCTGCACTCAAGCCTGGCGATCTGGTGATCTACGAATCCACGGTCTATCCCGGCACCACCGAAG
AAGTTTGCGTGCCCTTGCTAGAAGCAGCCTCCGGGCTGCGCTTCAACCACGATTTCTTCTGTGGCTACAGCCCCGAGCGC
GTCAATCCGGGCGATCGCCAGCGGCGTCTGCGCGACATCCGCAAGATCACTTCCGGCTCGACGCCTGAGGCCGCTGATGC
GGTCGATGCGCTGTACACCAGCATCATTACCGCTGGCACCTGGCGCGCCCCGTCGATGCGCGTGGCCGAAGCGGCAAAGG
TGGTCGAGAACATTCAGCGCGACGTCAATATCGCGCTGGTGAACGAACTGGCGTTGATCTTCGACAAGCTGGGAATCGAC
ACGCTCGATGTGCTCGAAGCCGCGGGAACCAAGTGGAATTTCCTGCCGTTTCGTCCTGGCCTGGTTGGCGGGCATTGCAT
CGGGGTGGATCCGTATTACCTGATGCACAAATCCCAAAGCGTGGGCTATCACCCCGACCTGATCCACACCGCGCGGCAGG
TCAACAATCGCGTCGGCCGCCATGTGGCCGAGCGCGTCTGCGGCATGCTGGCCATGCAGGGCATCGCGCTCGCGCAGGCG
AGGGTGCTGGTACTGGGCGCTACCTTCAAGGAGAACTGCCCGGATCTGCGCAACAGCCGCGCCCTGGAATTGGTGCACTT
GCTGCAGGCCGCGGGGGTGCAGGTGGACACCTGCGACCCGTGGGCAGACCCGGTGGAGGCGCTGCAGCACAGCGGCGTGC
AGCTCTGCGAGATGCCCCAGGACGGCGCCTACGACGCCGTGGTGCTGGCGGTGGCGCATGCGCAGTATCGCGCCTACGAC
GCCGCGCGCATTGCCGCGCTCGGCAAACCGGGCGCGGTGGTCTACGACGTCAAATCGGCGTGGCCGCGTGTGGCTGTCAG
CGATCGTCTGTAG

Protein sequence : 
MSGHTHLSPPPGRIAVIGLGYVGLPLAVAFGEQRDTLGFDIDAQRVAQLRDGHDATLELDETELAAATQVRYAADAADLA
SCSIFIVTVPTPIDSFEQPDLEPLRSATALIAAALKPGDLVIYESTVYPGTTEEVCVPLLEAASGLRFNHDFFCGYSPER
VNPGDRQRRLRDIRKITSGSTPEAADAVDALYTSIITAGTWRAPSMRVAEAAKVVENIQRDVNIALVNELALIFDKLGID
TLDVLEAAGTKWNFLPFRPGLVGGHCIGVDPYYLMHKSQSVGYHPDLIHTARQVNNRVGRHVAERVCGMLAMQGIALAQA
RVLVLGATFKENCPDLRNSRALELVHLLQAAGVQVDTCDPWADPVEALQHSGVQLCEMPQDGAYDAVVLAVAHAQYRAYD
AARIAALGKPGAVVYDVKSAWPRVAVSDRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-109 51
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 4e-109 51
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-95 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PXO_01511 YP_001914412.1 VI polysaccharide biosynthesis protein VipA/tviB VFG0431 Protein 1e-109 51