Gene Information

Name : PXO_06188 (PXO_06188)
Accession : YP_001913908.1
Strain : Xanthomonas oryzae PXO99A
Genome accession: NC_010717
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2842256 - 2843632 bp
Length : 1377 bp
Strand : +
Note : -

DNA sequence :
GTGAGCGCCCTGTTCGGCGCCACCCCGGCCGATTGGCTGGATGCACGCAATCTGCGCCTGGCCACGCGCCTGGGCACCCT
CGGCCTGGAACCCACCGCCGGCCGCACCCTGATCCGCGAAGGCATCCTGCGCCGTGCGGTCGGCCTGACCCTGGAAGCCA
CAGGCTGCGAAGCGCCGATGGGCGCCACCTGCAAGGTCGAAGTCGATGGCGGCTGGCTCGATGCCGAAGTGGTCGGTTTC
GCCGGCGAACGGACCTATTTGATGCCCAGTGCCGAACTGCACGGCCTGCTGCCGAATGCGCGCGTGGTGCCCTCGCGGCA
CCGCGGCGGCGTGGAAGTGGGCGAAGGCCTGCTCGGCCGCGTCATCGACAGCGACGGCACCCCGCTGGACGGCAAGGGCC
CGATCCGCGCCGAAGGCAGCGTCGGCATGGCCGGCGTGTCGATCAACCCGCTGGCGCGCGAACCCATCACCACCTCGCTG
GATGTCGGCGTACGCGCCATCAACGCCATGCTGCCGATCGGCCGCGGCCAGCGCGTGGGCCTGTTCGCCGGCTCCGGCGT
CGGTAAATCGACGCTGCTGGGCATGATGACCCGCTTCACCGCGGCCGACGTAATCGTGGTCGGGCTGATCGGCGAACGTG
GCCGCGAAGTGCGCGATTTCGTCGAGACCACCCTGGGCGAAGAAGGCCTGCGCCGCGCCGTCGTGGTGGCCGCCCCAGCC
GACCGCCCGCCGTTGGCGCGTCTGCATGGTGCCTATCGCGCCACCGCCATCGCCGAATGGTTCCGCGACCAGGGTTTGAA
CGTGCTGCTGCTGATGGATTCGCTGACCCGCTTCGCCCAGGCGCAGCGCGAGATCGGCCTGTCGGTCGGCGAGCCGCCGA
CCACCCGCGGCTACCCGCCGTCGGTGTTCGCCAAATTGCCGGCGCTGGTGGAACGGGCCGGCAACGGTGCCAAGGGCCGC
GGCTCGATCACCGCGTTCTACACCGTGCTGACCGAAGGCGACGACCCGCAGGACCCGATCGCCGACGCCGCCCGCGCCAT
TCTGGACGGCCACATTCTGCTCTCGCGTCGGGTTGCCGACAGCGGCCTGTACCCCGCCATCGACCTGGAATCCTCGGTCA
GCCGCGTGGTGCAGGACATCGCCGACGACACCTGGCGCCTGCGCATCCGCAAGCTCAAGCGGCTGCTCTCCGCCTACACC
GCCAACCGCGACCTGATCGCCATCGGCGCTTACCAGCGTGGCAGCGACCCGGCCACCGACGAAGCATTGGCGCGCTGGCC
GGAGATCGTCGAATTCCTAGGGCAGGACGTACACAAGGCGTCGGTCCTGAGCGACAGCCTGTCCGCCCTGCAGCAGCTGG
TCGAACCCGAGAACTAA

Protein sequence :
MSALFGATPADWLDARNLRLATRLGTLGLEPTAGRTLIREGILRRAVGLTLEATGCEAPMGATCKVEVDGGWLDAEVVGF
AGERTYLMPSAELHGLLPNARVVPSRHRGGVEVGEGLLGRVIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSL
DVGVRAINAMLPIGRGQRVGLFAGSGVGKSTLLGMMTRFTAADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVAAPA
DRPPLARLHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAGNGAKGR
GSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESSVSRVVQDIADDTWRLRIRKLKRLLSAYT
ANRDLIAIGAYQRGSDPATDEALARWPEIVEFLGQDVHKASVLSDSLSALQQLVEPEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-73 50
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-73 50
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-73 50
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-73 49
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-72 49
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-71 49
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-73 49
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-71 49
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-72 49
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 2e-68 49
lscN AAO18044.1 LscN Virulence TTSS locus Protein 7e-66 49
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-60 47
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-61 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 4e-61 47
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-61 47
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-60 47
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-55 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 4e-55 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 7e-53 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 9e-56 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 8e-56 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 4e-61 44
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 1e-56 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-56 44
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-56 44
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-55 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG1254 Protein 9e-101 60
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG2499 Protein 2e-95 58
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG2331 Protein 2e-89 57
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG0390 Protein 2e-68 51
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG0192 Protein 3e-66 49
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG0048 Protein 4e-70 48
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG0515 Protein 2e-61 47
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG2144 Protein 3e-69 46
PXO_06188 YP_001913908.1 flagellum-specific ATP synthase VFG2459 Protein 1e-56 41