Gene Information

Name : kdsB (PXO_00585)
Accession : YP_001913439.1
Strain : Xanthomonas oryzae PXO99A
Genome accession: NC_010717
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : -
Position : 2339771 - 2340448 bp
Length : 678 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
ATGATCCAGCACGTGGCCGAGCGTGCGTTGCTGGCGGGTGCGCGCGCAGTGTGGGTGGCCACCGACGATGCGCGCATCGC
CGAGGCGATCGCGCATCTGCCCGGCGTGCATGTGGCGATGACCGGAACTGCGCATCTTTCCGGCACCGACCGCCTTGCCG
AGTGCGCACGCATTGCCGGCTGGGACGAACAGACCTGCGTGGTCAATCTGCAAGGCGACGAGCCGTTCGCGCCGGCCGCC
GGCATCGGCGCGGTTGCCGATCTGTTGCAGCACTCCGGTGCCGAGATGGCCACGCTTGCCGCGCCGGTGGACAGCGCGCA
CGACCTGTTCGATCCCAACGTGGTGAAGCTGGTGCGCAACGCTCGCGGCGATGCGCTGTATTTCAGTCGTGCGCCGATTC
CCTGGCACCGCGACAGCTTCGCCAGCCAGCGCGACAGCGTGCCTGCAGAAGGTCAGTGGCTGCGCCACATCGGCATCTAC
GGCTATCGCGCGGGCTTCCTGCAGCGCTTCGCGGCGATGCCGCCCGGCATGCTGGAGCGCATCGAATCGCTGGAACAATT
GCGCGTGATGGAAGCTGGCTATCGCATTGCCGTGGCGGTGACGCCTGAGCCGTTTCCGCCGGGCATCGACACCCCGGACG
ATCTCGCCCGCGCGCAGGCACGGGTGGCTTCGGCATGA

Protein sequence :
MIQHVAERALLAGARAVWVATDDARIAEAIAHLPGVHVAMTGTAHLSGTDRLAECARIAGWDEQTCVVNLQGDEPFAPAA
GIGAVADLLQHSGAEMATLAAPVDSAHDLFDPNVVKLVRNARGDALYFSRAPIPWHRDSFASQRDSVPAEGQWLRHIGIY
GYRAGFLQRFAAMPPGMLERIESLEQLRVMEAGYRIAVAVTPEPFPPGIDTPDDLARAQARVASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 5e-29 42
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 8e-28 41
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 5e-28 41