Gene Information

Name : lolD (PXO_00596)
Accession : YP_001913428.1
Strain : Xanthomonas oryzae PXO99A
Genome accession: NC_010717
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2329684 - 2330394 bp
Length : 711 bp
Strand : +
Note : -

DNA sequence : 
GTGCAAACACCAGAACAGGCAACTGCGGTCATTCGCGCCGAGGCGCTGGCCAAGACCTACGCCGAAGGCAAGATGCGCAC
GCCGGTATTCGATGGCCTGGATCTATCGGTGGCGACCGGCGAAACCGTGGCGATCGTCGGCGCTTCCGGTGCCGGCAAGA
GCACCTTGCTGCATCTGCTCGGCGGGTTGGATATTCCGACCGCGGGCGAAGTGTATGTAGCGGGTGAGCGCATGTCGGCG
CTGTCCGATGCACAGCGCGGCAAGCTACGCAATCAGTCGCTTGGCTTTGTGTATCAGTTCCACCACCTGTTACCCGAATT
CACCGCGCTGGAAAACGTGATGATGCCGGTGCTGCTGTCTGGCAAAAACGTGGCCGTCGCCAAAGGGCAGGCGCTGCAAT
TGTTGGAATCGGTCGGGCTCGGGCATCGTATCGACCACAAGCCCAGTGAACTGTCGGGCGGCGAGCGTCAACGCTGTGCC
GTGGCGCGTGCACTGGTCAACAAGCCCGGCTGCGTGTTGGGCGACGAGCCCACCGGCAACCTCGACGACAAGACCGCGGG
CACGGTGTTCGAGCTGATGCTGGAGCTCAATCGTGCCCAGCGCACCAGCCTGGTCTTGGTGACGCACGACCGTGGCTTGG
CACGGCGCCTGGACCGCGTCCTGGAGCTGCATCAAGGAAAGCTGCGGGAACTGGCGCCGTCTGCGGTGTAA

Protein sequence : 
MQTPEQATAVIRAEALAKTYAEGKMRTPVFDGLDLSVATGETVAIVGASGAGKSTLLHLLGGLDIPTAGEVYVAGERMSA
LSDAQRGKLRNQSLGFVYQFHHLLPEFTALENVMMPVLLSGKNVAVAKGQALQLLESVGLGHRIDHKPSELSGGERQRCA
VARALVNKPGCVLGDEPTGNLDDKTAGTVFELMLELNRAQRTSLVLVTHDRGLARRLDRVLELHQGKLRELAPSAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-29 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_001913428.1 lipoprotein releasing system, ATP-binding protein NC_012469.1.7686878. Protein 4e-38 43
lolD YP_001913428.1 lipoprotein releasing system, ATP-binding protein NC_008702.1.4606598. Protein 2e-30 42