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Name : HPSH_04530 (HPSH_04530) Accession : YP_001910371.1 Strain : Helicobacter pylori Shi470 Genome accession: NC_010698 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3843 EC number : - Position : 894298 - 896205 bp Length : 1908 bp Strand : - Note : COG3843 Type IV secretory pathway, VirD2 components (relaxase) DNA sequence : ATGGCGTTAGAAAAAAGTTATAAAGACTTTGAAAGCGATGAGCTTTTTGATTATGAGATCATCAAGCCCAAAAAGACGCT TAAGGTACAATACACTTATGCTAAACGCTACTATAAAGAAGTGGAAAAGTTTGCTAAAAATTTAACCCAACTGGCACAAG AAGAATTCATGCGTTTAAGAGATCCGCAAAAACAAGTGGTCATCAAAAACATAGGCAATATGACACGCTTGCATTCAAAA AGGGCGATGGATTATATCGCTAAACATGGTGAGCTAGTGAGAGATGAATTTTTTAATGAAGTTAATTATAATGATATAGC AGAGCAATGGAATGAGCAATTTGAAAAATTATTAGAAAATAAGAGCCGTGTTAAAAATTGCGCTTTACATCTAGTGTTTA GCATTGATGAAAATTGTAATGAAAAAAATTTAAAAGCTTTAGAATTAAGCGTGTATCAAACACTCACTAACACGCTAGGT TATGATTATCCTTTTATAATGAAACTCCATACACACCAAAACAATCCGCATGCACATGTGATTATCAACAAGACTAACAG AATTACCAATAAGCAACTACGCTTTAATTCTAAAGACAGCTGTAAAGAGTTTTACCACACACTAAGAGAAACATTTAAAG ATTATTTATTTGCTAACTCAAAAGGCGAATTGCAATATTCTAACACGCCTAATATTTATAAGGTGATTAAAGACATAGAA ACAGAGTTAGATACGCTAGAAAAACAGGCTAGAAACAATAAGAGTTTTAGGCATGAAAACTATTTCTATAAAGTTTTGGG CAGTGCAACTTCTCAAATAGAAAGCTTGAAAAAAAGAGAAAATGCCCTATCTGATCATTTAGATAGTCTAAAAAGTTTAT TAGAAAAAACACATTGGGAAAAAGAAAAATTCACGCCCCTAATAAATGAAAAAGAACTTAACCAACAACTTAAAGAAATA AAATGGTTAAATAAAGAATCTTTAACCCCTAAAAACACTTATAAAAAAACTCAAAAATTGGTTGTCTGTAAAAGCCCTTT AATAAAAGATTATCTTTATACTACCAAAAAACTTTTTGCCACACAGAAAAAGATTATAGCTTTAGAGAAAGATTATAAAG ATTTAAAAGTCTTGAAGGAAGAATTTAGCAAAGATTTAGAAGCTGATTTATCCCATTCAAAAAAACGCTTTGAGCTTTAC ACTAGACTAAAAAGCATGAGCAAAGTTTTTATAAGCAAAAGCATTGTTAAAAATTTAGAAAAAATTGCTTTAAATTTTAA AAGCGATAGACATAGTATTTCGCAAAGAGCTTTTGAATTTTTTAGGTATATGAATTATCAAAATTTAAGCTTGACTGATA AAGGCAATATGTTTTTAGTGGCTAAGTTTTTTAAAGATAGCGCTTTACTTGTTAATATTGCTAGGTTTGAAATGAAAAAG ATAGATGATAGTGTTAAAAATTCTAACGCACAAGGCAATTTATTAGACAAACAAGCTTGGCTTAATCTTTTAGAACATTT AAAAAGACTTGAAGAGGAAAACTATTGTTTTGCTAAGAAGCGAAAAGAATTCTTAGAAACTAGAGCTATGGAGCTATCAA AAGATTTAAAATTTTTAACACAGGTCAATGAAAATGATTTGCCTATTTATGAAAGAGGGCAAAGGGATAAAATCATTAAA CGCTGTGAAAAATCGCTTAATTTTTTGCAGAAAGAATTACAATGCTTTAAAACCTTATTGAAAAGTGCAAGTATAGCTTT AGAAAACTTGCAAAGCAACCATCAAATCACAGCCGTTACACAAGACACACAAGAAAACACAAACGCACTCAAAAATACCA CTCAAGATTTTAACAAAACTACCAATGAACCCACAAACCCTAACAATAACCATGAAATGGATTTTTAA Protein sequence : MALEKSYKDFESDELFDYEIIKPKKTLKVQYTYAKRYYKEVEKFAKNLTQLAQEEFMRLRDPQKQVVIKNIGNMTRLHSK RAMDYIAKHGELVRDEFFNEVNYNDIAEQWNEQFEKLLENKSRVKNCALHLVFSIDENCNEKNLKALELSVYQTLTNTLG YDYPFIMKLHTHQNNPHAHVIINKTNRITNKQLRFNSKDSCKEFYHTLRETFKDYLFANSKGELQYSNTPNIYKVIKDIE TELDTLEKQARNNKSFRHENYFYKVLGSATSQIESLKKRENALSDHLDSLKSLLEKTHWEKEKFTPLINEKELNQQLKEI KWLNKESLTPKNTYKKTQKLVVCKSPLIKDYLYTTKKLFATQKKIIALEKDYKDLKVLKEEFSKDLEADLSHSKKRFELY TRLKSMSKVFISKSIVKNLEKIALNFKSDRHSISQRAFEFFRYMNYQNLSLTDKGNMFLVAKFFKDSALLVNIARFEMKK IDDSVKNSNAQGNLLDKQAWLNLLEHLKRLEEENYCFAKKRKEFLETRAMELSKDLKFLTQVNENDLPIYERGQRDKIIK RCEKSLNFLQKELQCFKTLLKSASIALENLQSNHQITAVTQDTQENTNALKNTTQDFNKTTNEPTNPNNNHEMDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD2-1 | YP_002301087.1 | relaxase | Virulence | cag PAI | Protein | 0.0 | 94 |
