Gene Information

Name : HPSH_04310 (HPSH_04310)
Accession : YP_001910327.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Cag gamma
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 842336 - 842716 bp
Length : 381 bp
Strand : -
Note : -

DNA sequence : 
GTGGTGTGCAGAACGCTCATCTCTATCGCTTTATTGGAAAGTTCTTTAGGGTTGAACAACAAGCGCGAAATTTCTATTAA
AGACACTTCCTATTCCATGTTTCACATCACCTTAAACACCGCTAAAAAATTCTACCCCACCTATTCTAAAACGCTCCTCA
AATACAAATTGCTCAATGATGTGGATTTTGCGATTTTGTTGGCTAAAAGAATTTTGAAAGAAAATTTTGATTACTACAAA
CAAAAACACCCCGATAAAAGCGTGTATCAAATAGTAGAAATGGCAGTAGGCGCTTACAATGGGGGAATGAAACACAACCC
TAATGGCGCTTATGTAAAGAGATTTCGTTGCATTTATTCTCAGGTGCGATATAACGAGTAG

Protein sequence : 
MVCRTLISIALLESSLGLNNKREISIKDTSYSMFHITLNTAKKFYPTYSKTLLKYKLLNDVDFAILLAKRILKENFDYYK
QKHPDKSVYQIVEMAVGAYNGGMKHNPNGAYVKRFRCIYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-45 95
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 4e-45 95
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-45 95
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-44 95
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-44 95
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 5e-44 95
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 1e-44 95
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 1e-44 94
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-45 94
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-44 93
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-44 93
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 4e-44 93
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-44 93
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-44 93
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 8e-45 93
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 8e-43 92
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 3e-43 92
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 2e-43 92
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-44 92
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 3e-43 91
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 4e-42 90
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 6e-43 90
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-43 90
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 6e-43 90

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04310 YP_001910327.1 cag pathogenicity island protein Cag gamma VFG0283 Protein 2e-43 90