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Name : HPSH_04305 (HPSH_04305) Accession : YP_001910326.1 Strain : Helicobacter pylori Shi470 Genome accession: NC_010698 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein Cag beta Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3505 EC number : - Position : 839971 - 842217 bp Length : 2247 bp Strand : + Note : COG3505 Type IV secretory pathway, VirD4 components DNA sequence : ATGGAAGACTTTTTATATAACACCTTATATTTCATAGAGGATTATAAGTTGGTTGTTATTTTTAGTTTCATAGGGTTAAT AGCGTTATTTTTTCTCTACAAATTCATAAAAGCTCAAAAAAAGGCTTTTAAAGATAAAGCTAACCAACCTCAAAAGAAAA AAAACTTTAAAGAAATCATTATAGAGGGGCTGAAAGAAAGAGTTAAAACCTTTGGCTTTTGGTTACAAGCTATACTATTA CTATCCTATTCTTTTATCACATCAGGGTTATTTTTCTTGATTCTCTTAGGTAATTTTTATGATGACAATAAATTGCCTGA GAGTGATGATGATCTTTTTGATATATGGATCTATGCGATACAAGATTTTCCTGCATACTATTTTAAGGCGCTTTGTTTTA GTTCACTCAAGATTTATGGGTTCAATATATCCTTAGTCGTATATAGTTCTATTTTATGCTCTTATATATTCATTACCTTT TTTGTGTGGTTCTTAAAATACTTAACTCGGACTAGAGACATAGGAGCGAATAAAAAAGTTGATGATCTCTTTGGTAGCGC GAGTTGGGAGAGCGAAGAAAAAATGATCAAAGCTAAACTTATCACACCCAATAATAAAAAACGCGCCTTTGACAAACGAG AGGTTATTGTAGGCAGGCGTGGTTTAGGGGATTTTATCGCTTATGCAGGACAGGCGTTCATTGGCTTGATCGCTCCCACT AGAAGCGGTAAGGGTGTGGGTTTCATCATGCCCAATATGATCAATTATCCTCAAAATATCGTTGTGTTTGACCCTAAGGC TGACACTATGGAAACTTGCGGAAAAATCAGAGAAAAACGCTTCAACCAAAAAGTGTATATCTATGAACCTTTCTCCTTAA AAACACACCGATTTAATCCTTTCGCTTATGTGGATTTTGGTAACGATGTGGTTTTGACTGAAGACATACTCTCTCAAATT GACACACGCCTAAAAGGTCATGGGATGGTGGCTAGTGGGGGGGATTTTTCCACTCAAATCTTTGGATTGGCTAAGTTGGT GTTCCCTGAAAGACCTAATGAAAAAGATCCTTTTTTTAGCAATCAGGCGCGAAATCTTTTTGTCATTAATTGCAATATTT ATAGGGATCTCATGTGGACTAAAAAGGGGCTTGAATTTGTCAAAAGAAAAAAAATCATCATGCCTGAAACCCCCACGATG TTTTTCATAGGTTCTATGGCGAGCGGTATCAATTTGATTGATGAAAACACAAACATGGAAAAAGTTGTGTCTCTGATGGA ATTTTTTGGAGGTGAAGAAGATAAGAGTGGCGACAATCTAAGAGTGCTTAGTCCTGCTACTAGAAACATGTGGAACAATT TCAAAACAATGGGTGGTGCTAAAGAAACTTACAGCTCTGTTCAAGGGGTCTATACCTCAGCGTTTGCGCCTTACAATAAT GCTATGATTAGGAATTTCACGAGCGCTAATGATTTTGATTTCAGGCGTTTGAGGATTGATGAAGTGAGTATTGGCGTGAT CGCTAACCCTAAAGAAAGCACTATTGTTGGGCCGATATTAGAGCTGTTTTTCAATGTGATGATTTATAGCAACCTTATTC TGCCAATCCATGATCCACAATGCAAAAGAAGTTGTTTGATGCTTATGGATGAGTTCACGCTCTGTGGCTATTTAGAAACC TTTGTGAAAGCGGTAGGGATTATGGCAGAATACAACATGCGCCCTGCCTTTGTGTTTCAAAGTAAGGCGCAACTAGAGAA TGACCCCCCACTTGGTTATGGTAGGAATGGCGCTAAGACTATTTTAGACAACCTTTCTTTAAATATGTATTATGGGATTA ACAACGATAACTACTATGAACATTTTGAAAAACTTTCTAAGGTGTTGGGGAAATACACAAGGCAAGACGTGAGTCGAAGC ATTGATGATAATACAGGTAAGACCAACACTTCTATCAGCAACAAAGAGCGGTTTTTGATGACCCCTGATGAATTGATGAC CATGGGCGATGAGCTTATCATTTTAGAAAACACGCTCAAACCCATCAAATGCCACAAGGCACTCTACTATGATGATCCGT TCTTCACCGATGAACTCATCAAAGTGAGTCCAAGCTTGAGCAAGAAATACAAATTGGGGAAAGTGCCTAATCAAGCAACT TTCTATGATGATTTGCAAGCCGCTAAAACTAGAGGCGAATTGAGCTATGACAAGTCTTTAGTGCCTGTGGGTTCAAGCGA ACTGTGA Protein sequence : MEDFLYNTLYFIEDYKLVVIFSFIGLIALFFLYKFIKAQKKAFKDKANQPQKKKNFKEIIIEGLKERVKTFGFWLQAILL LSYSFITSGLFFLILLGNFYDDNKLPESDDDLFDIWIYAIQDFPAYYFKALCFSSLKIYGFNISLVVYSSILCSYIFITF FVWFLKYLTRTRDIGANKKVDDLFGSASWESEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVYIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQI DTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTM FFIGSMASGINLIDENTNMEKVVSLMEFFGGEEDKSGDNLRVLSPATRNMWNNFKTMGGAKETYSSVQGVYTSAFAPYNN AMIRNFTSANDFDFRRLRIDEVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLET FVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRS IDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT FYDDLQAAKTRGELSYDKSLVPVGSSEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0524 | BAD14023.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13857.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005779066.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03947.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD14049.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005774545.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03858.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13776.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_003728740.1 | cag pathogenicity island protein beta | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13803.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13967.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag-beta | AAF80195.1 | Cag-beta | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | NP_207320.1 | cag pathogenicity island protein (cag5) | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03887.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| virD4 | NP_223191.1 | cag island protein, DNA transfer protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13830.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13885.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005775727.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13995.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13940.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005777268.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03916.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0524 | BAD13912.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH_04305 | YP_001910326.1 | cag pathogenicity island protein Cag beta | VFG0284 | Protein | 0.0 | 99 |
