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Name : HPSH_04280 (HPSH_04280) Accession : YP_001910321.1 Strain : Helicobacter pylori Shi470 Genome accession: NC_010698 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein CagX Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3504 EC number : - Position : 831082 - 832650 bp Length : 1569 bp Strand : + Note : COG3504 Type IV secretory pathway, VirB9 components DNA sequence : ATGGAGCAGGCATTTTTTAAAAAAATTGTTGGCTGTTTCTGTCTTGGTTATTTATTTTTATCTAGCGTAATAGAAGCAGC AGCACCTGACATTAAAAATTTTAATCGTGGTAGGGTGAAAGTGGTGAATAAGAAGATTGCTTATTTAGGAGATGAAAAAC CTATTACGATTTGGACTTCATTAGACAATGTTACTGTGATCCAACTTGAAAAAGATGAAACCATTTCTTACATCACAACA GGTTTCAATAAAGGTTGGAGTATTGTGCCTAATTCTAATCATATATTCATTCAACCTAAATCGGTAAAAAGTAATCTCAT GTTTGAAAAAGAAGCAGTGAATTTTGCTCTAATGACAAGAGATTACCAAGAATTTTTAAAAACAAAAAAACTTATCGTAG ATGCACCTGACCCTAAAGAATTAGAAGAACAAAAAAAAGCTCTAGAAAAAGAAAAAGAAGCTAAAGAACAGGCGCAAAAA GCGCAAAAAGATAAAAGAGAAAAAAGAAAGGAAGAGCGTGCAAAAAATAGAGCCAATTTAGAAAATCTCACTAACGCTAT GAGTAACCCACAAAATTTGAGCAATAACAAAAATCTTAGCGAATTTATCAAGCAACAACGAGAAAATGAATTAGACCAAA TGGAACGACTAGAGGACATGCAAGAACAGGCTCAAGCTAATGCACTCAAACAAATTGAAGAACTCAACAAGAAACAAGCT GAAGAGACAATAAAACAAAGAGCCAAGAATAAAATCAATATTAAGACAGATAAGCCTCAAAAAAGCCCTGAGGATAACTC CATAGAATTATCTCCTAGCGATAGCGCTTGGAGAACTAATCTTGTTGTGCGGACCAATAAGGCCTTGTATCAATTCATTT TGAGAATAGCTCAAAAAGACAATTTTGCTTCGGCGTATCTAACAGTCAAATTAGAATACCCACAAAGACACGAAGTCTCT AGCGTTATTGAAGGGGAGCTAAAAAAGAGAGAAGAAGCAAAGAGGCAGAGAGAATTGATTAAGCAAGAAAATCTTAACAC CACAGCCTACATCAATAGAGTAATGATGGCGAGCAACGAACAGATTATCAACAAAGAAAAAATAAGAGAAGAAAAACAAA AAATTATCTTAGATCAAGCAAAGGCGCTAGAGACTCAATATGTGCATAATGCATTAAAAAGAAACCCTGTGCCTAGAAAC TACAATTACTACCAAGCACCTGAAAAACGCTCTAAACATATTATGCCCTCTGAAATTTTTGATGATGGCACATTCACTTA TTTTGGTTTCAAAAACATCACCCTCCAACCTGCTATTTTTGTGGTTCAGCCTGATGGGAAATTAAGCATGACTGATGCCG CTATTGATCCTAACATGACCAATTCAGGATTGAGATGGTATAGAGTTAATGAAATTGCAGAAAAGTTTAAGCTCATTAAA GACAAAGCCCTTGTAACAGTAATAAATAAAGGCTATGGGAAAAATCCATTGACAAAAAATTACAATATCAAAAACTATGG TGAATTGGAGCGTGTGATTAAAAAGCTCCCTCTTGTCAGAGATAAATAA Protein sequence : MEQAFFKKIVGCFCLGYLFLSSVIEAAAPDIKNFNRGRVKVVNKKIAYLGDEKPITIWTSLDNVTVIQLEKDETISYITT GFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQK AQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA EETIKQRAKNKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFASAYLTVKLEYPQRHEVS SVIEGELKKREEAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRN YNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cagX | YP_005779062.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagX | YP_005775731.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagX | YP_005774541.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13944.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13861.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13834.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13807.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13780.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13889.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13971.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD14027.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag8 | AAR03921.1 | Cag8 | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag-X | AAF80199.1 | Cag-X | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD14053.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag8 | AAR03952.1 | Cag8 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13999.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | NP_207324.1 | cag pathogenicity island protein (cag8) | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0528 | BAD13916.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagX | YP_005777272.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag8 | AAR03863.1 | Cag8 | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag8 | AAR03891.1 | Cag8 | Virulence | cag PAI | Protein | 0.0 | 98 |
| orf15 | NP_223195.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| cagX | AGC69795.1 | cag pathogenicity island protein X | Virulence | cag PAI | Protein | 0.0 | 98 |
| cagX | YP_003728736.1 | cag pathogenicity island protein X | Virulence | cag PAI | Protein | 0.0 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH_04280 | YP_001910321.1 | cag pathogenicity island protein CagX | VFG0288 | Protein | 0.0 | 99 |
