Gene Information

Name : HPSH_04275 (HPSH_04275)
Accession : YP_001910320.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagW
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 829423 - 831030 bp
Length : 1608 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAATATCAAAAGGATTTTTTTAATAACGATCATAAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGTTATACATCTATTGGTGCGTCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGTGCACCATTAGCTACAAGTTTAGCCGCTAGCAATCTAGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACCCCATCAAGTGGTTGCAATTTTGGTTGGAACG
CATTGATAAATAAAAACATAGATGTATCCACAGATAGCATGCTAGACAATTTGAGCAACAAGATTCGGAATTTTACCAAA
GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTGGCTCAATAACCGCTCAAGTTTCTACGAATAT
TACAGCTAATAGTTTAATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG
CTTTTGCCGCACTAGAATCTATTGTCAAAGGAGCGGACGCTACTGTTCTTCCTGCATATAGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAATGGCATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTATCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGCGCTTTTGGGCTGAATCAAACTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTTGCAGGTA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTGGGTATCGATTCGACTATTGCGAGT
TTGATCACTTTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAG
TTCTGTCTCTATGGATGGTAGCAGAATGGATAGGGAACGAGATGCCTTAATGGTAGGAAAAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNIKRIFLITIISFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSAPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSTDSMLDNLSNKIRNFTK
GGVEDNVKGNVLLQIIGSITAQVSTNITANSLIWLIGKEFTANKLQNNTTAMLAFAALESIVKGADATVLPAYSVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQTLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMVGKVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 97
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 97
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 97
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04275 YP_001910320.1 cag pathogenicity island protein CagW VFG0289 Protein 0.0 97