Gene Information

Name : HPSH_04260 (HPSH_04260)
Accession : YP_001910317.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 826879 - 827721 bp
Length : 843 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGAGAGCAAGTGTTTTAATCGGTGCGATAATTCTGTGCTTAACTTTAAGCGCGTGCAGTAATTATGCGAAAAA
AGTGGTGAAACAAAAGAACCATGTTTATACGCCTGTGTATAATGAATTGATAGAGAAGTATAGTGAGATACCCTTAAATG
ACAAACTCAAAGACACACCATTCATGGTGCAAGTGAAGTTGCCAAATTACAAGGACTATTTGTTGGATAATAAACAAGTT
GTATTAACTTTCAAACTTGTTCATCATTCTAAAAAGATTACGCTCATAGGCGATGCCAATAAGATACTCCAATACAAGAA
TTACTTCCAAGCTAATGGAGCGAGATCCGATATTGATTTTTACTTGCAGCCTACTTTGAATCAAAAGGGTGTGGTGATGA
TAGCGAGTAACTATAATGATAATCCTAACAACAAAGAACAACCACAGACTTTTGATGTGTTGCAAGGAAGTCAGCCAATG
CTAGGAGCTAACACAAAAAACTTGCATGGCTATGATGTGAGTGGAGCAAACAACAAGCAAGTGATCAATGAAGTGGCAAG
AGAAAAAGCTCAGCTAGAAAAAATCAATCAGTATTACAAAACGCTCTTACAAGACAAGGAACAAGAATACACCACTAGAA
AAAATAACCAACGAGAAATTTTAGAAACATTGAGTAATCGTGCAGGTTACCAAATGAGACAGAATGTGATTAGTTCTGAG
ATTTTTAAGAATGGCAACTTGAACATGCAATCCAAAGAAGAAGAAGTTAGGGAGAAGCTACAAGAAGAAAGAGAGAATGA
ATACTTGCGCAATCAAATCAGAAGTTTGCTCAGTGGTAAGTGA

Protein sequence : 
MKLRASVLIGAIILCLTLSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTPFMVQVKLPNYKDYLLDNKQV
VLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDFYLQPTLNQKGVVMIASNYNDNPNNKEQPQTFDVLQGSQPM
LGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSE
IFKNGNLNMQSKEEEVREKLQEERENEYLRNQIRSLLSGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0532 NP_207328.1 cag pathogenicity island protein (cag12) Virulence cag PAI Protein 1e-117 99
HP0532 BAD13784.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
cagT AGC69799.1 cag pathogenicity island protein T Virulence cag PAI Protein 8e-118 99
HP0532 BAD13893.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
cag12 AAR03895.1 Cag12 Virulence cag PAI Protein 8e-118 99
cagT YP_005777276.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
HP0532 BAD13948.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD13975.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-118 99
cagT YP_005779058.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
HP0532 BAD14057.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD14003.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-118 99
cagT YP_005774537.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
HP0532 BAD13865.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 99
cag12 AAR03925.1 Cag12 Virulence cag PAI Protein 4e-118 99
cagT YP_005775735.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
HP0532 BAD13838.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-119 99
cag12 AAR03956.1 Cag12 Virulence cag PAI Protein 4e-118 99
cagT NP_223199.1 cag island protein Virulence cag PAI Protein 2e-117 99
HP0532 BAD13811.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
cagT YP_003728732.1 cag pathogenicity island protein T Virulence cag PAI Protein 1e-117 99
HP0532 BAD13920.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
cag12 AAR03867.1 Cag12 Virulence cag PAI Protein 1e-117 99
cagT AAF80203.1 CagT Virulence cag PAI Protein 3e-117 98
HP0532 BAD14031.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-117 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04260 YP_001910317.1 cag pathogenicity island protein CagT VFG0292 Protein 4e-118 99