Gene Information

Name : HPSH_04240 (HPSH_04240)
Accession : YP_001910313.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 824858 - 825163 bp
Length : 306 bp
Strand : -
Note : -

DNA sequence : 
ATGGGAAAAATTTTAGCTTCTTTGTTGGGTGGCGGAACAAATCTTTTTATGGGTTTATCTAGTGATTTGTTTTCTATGAT
ATTAAATTTTTTGTTCTTTCTAATGTTAATGATGGGACTTAATGAAATATTAGAGAAGAAATTCAACTTACCCATGGATA
ATATCAAGAATTTTATGACGGAAGTGCTGAAGAATGGATTTGGTAGTATGAAAAACATGGGATCTGCTTTGATTGGCAAT
GGTTTTAGCAGTAGCAAATCAGACAAAACCGCTAATAAAATGGGCGTCCCCCAAGTAAAACTTTAG

Protein sequence : 
MGKILASLLGGGTNLFMGLSSDLFSMILNFLFFLMLMMGLNEILEKKFNLPMDNIKNFMTEVLKNGFGSMKNMGSALIGN
GFSSSKSDKTANKMGVPQVKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0535 BAD14006.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-27 99
HP0535 BAD13841.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-27 99
HP0535 BAD14060.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-26 98
HP0535 BAD13787.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-27 98
HP0535 BAD13951.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-27 98
HP0535 BAD13978.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-26 97
HP0535 BAD13896.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-26 97
HP0535 BAD13814.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-26 96
HP0535 BAD14033.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-23 90
cagQ AAC44691.1 CagQ Virulence cag PAI Protein 1e-23 90
cag14 AAR03897.1 Cag14 Virulence cag PAI Protein 1e-23 90
cag14 AAR03958.1 Cag14 Virulence cag PAI Protein 1e-23 90
cagQ NP_223201.1 cag island protein Virulence cag PAI Protein 7e-24 90
HP0535 BAD13868.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-23 89
cag14 AAR03927.1 Cag14 Virulence cag PAI Protein 1e-23 89
HP0535 NP_207331.1 cag pathogenicity island protein (cag14) Virulence cag PAI Protein 8e-24 89
cag14 AAR03869.1 Cag14 Virulence cag PAI Protein 3e-23 89
cagQ YP_003728730.1 cag pathogenicity island protein Q Virulence cag PAI Protein 2e-23 88
HP0535 BAD13923.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-23 86

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04240 YP_001910313.1 cag pathogenicity island protein CagQ VFG0294 Protein 2e-24 89