Gene Information

Name : HPSH_04210 (HPSH_04210)
Accession : YP_001910307.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 819169 - 819513 bp
Length : 345 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACAACCGATTAGCAAATTAAAACAAAACTTCTTACAATTCAAACATTCTTTCAATAAACATTTAGATAAGTACAG
CTTATATTATAGGCTGTTCAATATTAGCTCTATCGTTATAGGTTTTTTAATAGGGCTTTTTTCTTATGGGGCAGGGGTGA
TTTTAGTTTATCCAATATTATTCTTATTTGCTCTTATAACAAAACCTAGCTTTTTTTATTACACTACTTATCTTTTGCTA
CTCGTTTCTCTCAGCGTAATAAGCAAATACTATCTCTTAAGCCACGCAAATTTCACAATGAAGCTAATCATACTTATGAC
TCAATGGCAAAACTGGTTCTTGTAA

Protein sequence : 
MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPILFLFALITKPSFFYYTTYLLL
LVSLSVISKYYLLSHANFTMKLIILMTQWQNWFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0536 BAD14061.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-33 100
HP0536 BAD14007.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-32 99
HP0536 BAD13815.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-32 99
HP0536 BAD13897.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-32 99
HP0536 BAD13952.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-32 99
HP0536 BAD13869.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-32 98
HP0536 BAD13788.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-32 98
HP0536 BAD13842.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-31 98
cag15 AAR03928.1 Cag15 Virulence cag PAI Protein 6e-32 97
HP0536 BAD13979.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-28 97
HP0536 BAD13924.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-31 96
cagP NP_223202.1 cag island protein Virulence cag PAI Protein 2e-31 96
HP0536 NP_207332.1 cag pathogenicity island protein (cag15) Virulence cag PAI Protein 1e-31 96
cagP AAF80206.1 CagP Virulence cag PAI Protein 3e-29 96
HP0536 BAD14034.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-31 96
cag15 AAR03959.1 Cag15 Virulence cag PAI Protein 8e-32 95
cag15 AAR03870.1 Cag15 Virulence cag PAI Protein 3e-31 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04210 YP_001910307.1 cag pathogenicity island protein CagP VFG0295 Protein 3e-32 96