|
Name : HPSH_04205 (HPSH_04205) Accession : YP_001910306.1 Strain : Helicobacter pylori Shi470 Genome accession: NC_010698 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein CagM Function : - COG functional category : - COG ID : - EC number : - Position : 817613 - 818743 bp Length : 1131 bp Strand : - Note : - DNA sequence : ATGCTTGCAAAAATCGTTTTTAGCTCATTGGTTGCGTTTGGAGTTTTGTCGGCTAATGTGGAGCAGTTTGGTTCATTTTT CAACGAGATAAAAAAAGAACAAGAAGAGGTGGCTGCAAAAGAAGACGCTCTTAAGGCCCGCAAAAAGCTCTTAAATAATA CGCATGATTTCTTAGAAGACTTGATTTTTAGAAAACAAAAAATCAAAGAGCTTGTGGATCATAGAGCTAAAGTTCTTTTA GATTTAGAAAACAAATACAAAAAAGAAAAAGAGGCTCTAGAGAAAGAGACAAGAGGTAAAATCCTTACTGCTAAGTCAAA GGCTTATGGGGATCTAGAGCAAGCCTTAAAAGATAACTCTCTCTATAAGAAACTTCTTCCTAACCCTTATGCCTATGTTT TAAACCAAGAAACATTCACCAAAGAAGATAAGGAGCGTTTGAGCTATTACTACCCACAAGTCAAAAACAGCAACATTTTC AAAAAAACTACCGCTACCACTAAAGATAAGGCTCAGGCTTTGCTTCAAATGGGTGTGTTTTCTTTAGATGAAGAACAAAA CAAAAAAGCGAGCCGATTAGCTTTATCTTACAAGCAAGCGATTGAAGAATATTCCAATAACATTTCTAATTTATTGAGCA GAAAAGAATTGGATAATATAGATTATTACTTACAGCTTGAAAGAAACAAGTTTGACTCCAAAGCAAAAGATATCGCTCAA AAAGCTACTAACACGCTTATTTTTAACTCGGAACGCTTGGCGTTTAGCATGGCGATTGATAAGATCAATGAGAAATACTT AAAGGGTTATGAGGCTTTTTCTAACTTGTTGAAAAATGTCAAAGATGATGTGGAATTGAATACTCTGACTAAAAACTTTA CCAATCAAAAATTGAGTTTCGCTCAAAAACAAAAATTGTGTTTGTTGGTTTTAGACAGCTTCAATTTTGATACCCAATCC AAAAAATCTATATTAAAAAAGACTAATGAATACAATATTTTCGTAGATAGCGATCCTATGATGAGTGACAAAACAACTAT GCAAAAAGAACACTACAAGATATTTAATTTCTTCAAAACAGTGCTTTCTGCATACCGAAACAATGTTGCCAAGAATAATC CCTTTGAATAG Protein sequence : MLAKIVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLIFRKQKIKELVDHRAKVLL DLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNSLYKKLLPNPYAYVLNQETFTKEDKERLSYYYPQVKNSNIF KKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLSRKELDNIDYYLQLERNKFDSKAKDIAQ KATNTLIFNSERLAFSMAIDKINEKYLKGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQS KKSILKKTNEYNIFVDSDPMMSDKTTMQKEHYKIFNFFKTVLSAYRNNVAKNNPFE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cagM | AAC44695.1 | CagM | Virulence | cag PAI | Protein | 9e-150 | 99 |
| cag16 | AAR03899.1 | Cag16 | Virulence | cag PAI | Protein | 9e-150 | 99 |
| HP0537 | BAD13953.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-150 | 99 |
| cagM | YP_005775737.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-150 | 99 |
| HP0537 | BAD13898.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-150 | 99 |
| cag16 | AAR03960.1 | Cag16 | Virulence | cag PAI | Protein | 2e-149 | 99 |
| cagM | YP_005779056.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 8e-151 | 99 |
| HP0537 | BAD13870.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-150 | 99 |
| cagM | YP_005774534.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-151 | 99 |
| HP0537 | BAD13789.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-151 | 99 |
| cag16 | AAR03871.1 | Cag16 | Virulence | cag PAI | Protein | 1e-149 | 99 |
| cagM | NP_223203.1 | cag island protein | Virulence | cag PAI | Protein | 6e-149 | 98 |
| HP0537 | NP_207333.1 | cag pathogenicity island protein (cag16) | Virulence | cag PAI | Protein | 4e-149 | 98 |
| HP0537 | BAD13980.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-150 | 98 |
| cagM | YP_003728727.1 | cag pathogenicity island protein M | Virulence | cag PAI | Protein | 4e-149 | 98 |
| HP0537 | BAD13843.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-150 | 98 |
| HP0537 | BAD13925.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-148 | 98 |
| cagM | YP_005777278.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-150 | 98 |
| cagM | AGC69800.1 | cag pathogenicity island protein M | Virulence | cag PAI | Protein | 3e-149 | 98 |
| cag16 | AAR03929.1 | Cag16 | Virulence | cag PAI | Protein | 1e-149 | 98 |
| HP0537 | BAD14008.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-147 | 97 |
| HP0537 | BAD13816.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-147 | 97 |
| HP0537 | BAD14035.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 6e-148 | 97 |
| HP0537 | BAD14062.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 8e-142 | 96 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH_04205 | YP_001910306.1 | cag pathogenicity island protein CagM | VFG0296 | Protein | 2e-149 | 98 |
