Gene Information

Name : HPSH_04200 (HPSH_04200)
Accession : YP_001910305.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagN
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 816678 - 817598 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTCATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCCATCAAAGACATGACG
ACAAAGAAGTTACAGAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAAAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGACTAAGCACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGGCAATCCTAATAGTAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCGTTTGTGAAACCTGCTACTCCGCTTGTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAACCATTATCAATGAGTGTATTCTTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAGCTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGT
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGGGC
TACTGATACAAAAAAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTLHQRHDDKEVTEEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKATKHKGLQELNETNANPLNGNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPATPLVPN
EWRTPEIETIINECILSSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKKNEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-111 97
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-115 97
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-111 97
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-111 97
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-115 97
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-110 97
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-110 96
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 1e-114 96
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-110 96
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-110 96
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-109 96
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-110 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-110 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 2e-114 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 95
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 4e-113 95
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 2e-114 95
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 4e-115 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 3e-111 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 3e-113 94
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 94
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 94
cagN AAF80207.2 CagN Virulence cag PAI Protein 5e-113 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04200 YP_001910305.1 cag pathogenicity island protein CagN VFG0297 Protein 5e-115 96