Gene Information

Name : HPSH_04185 (HPSH_04185)
Accession : YP_001910302.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 813803 - 814735 bp
Length : 933 bp
Strand : +
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGACCCAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAACCAACAATACAACCAATTGTA
TCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAATAATATCTTAAATATTAGCAAATTAACAGGGGAATTTAATGCGC
AAGGCAACACGCAAGGTGCGCAAATTGGTGCTGTTAATAGTCAGATTGCAAGCATTTTAGCGAGTAACACTACCCCTAAA
AATCCCAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACAACGGTTGAAATGATGAGCGG
TATCTTAGGCAATATTACAAGTGCAGCACCAAAATACGCCCTAGCCCTACAAGAGCAACTGCGTTCTCAAGCAAGCAACA
GCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTGGGTGCGCTTGCTAGCTCATCAAAAGTGTTTTTT
AGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAATACCAAGCGTTAGTCGCTAA
TGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTACTGGGGACAAAGTTCTTGTCGTTTATTGCTATG
CTGAAAAGGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCAATTTGTTGCAAAACGCTTCT
CAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCTAACATAAGCTCGCTATATAA
CTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATCTGACTTATCTTGATTACATCAAAGACAAACTTAAGGGGC
AAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQIGAVNSQIASILASNTTPK
NPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFF
SCMQISMTPMSVSMPTVYAKYQALVANALTSGVNPMTTPACPTGDKVLVVYCYAEKVAEILREYYIEFVKNNTNLLQNAS
QMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH AAC44699.1 CagH Virulence cag PAI Protein 4e-138 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 2e-137 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-138 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 3e-138 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-138 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-137 99
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-138 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 7e-137 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 6e-137 98
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 6e-137 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 3e-137 98
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-137 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-136 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 2e-136 98
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-137 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 1e-136 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-137 98
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 3e-137 98
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-135 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-135 97
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 4e-136 97
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 6e-136 97
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 4e-136 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-137 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04185 YP_001910302.1 cag pathogenicity island protein CagH VFG0300 Protein 2e-136 97