Gene Information

Name : HPSH_04175 (HPSH_04175)
Accession : YP_001910300.1
Strain : Helicobacter pylori Shi470
Genome accession: NC_010698
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein CagG
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 813190 - 813621 bp
Length : 432 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACGAATTTTTATAAAATTAAATTACTATTTGCTTGGTGTCTTATCATTGGTATGTTTAACGCTCCGCTTAACGC
TGACCAAAACACTGATATAAAAGATATTAGTCCTGAAGATATGGCACTAAATAGCGTGGGGCTTGTTTCTAGAGATCAAC
TAAAAATAGAGATCCCTAAAGAAACCCTAGAGCAAAAAGTGGCCATACTCAATGACTATAATGATAAGAATGTTAATATC
AAGTTTGATGACATAAGTTTAGGGAGTTTTCAACCTAATGATAATCTAGGTATCAATGCGATGTGGGGCATTCAAAATCT
TCTCATGAGCCAAATGATGGGCGATTACGGCCCAAACAATCCTTTCATGTATGGTTATGCACCAACATATCCAGATTCAT
CGTTTTTACCACCAGGCTTAGGGGGGTATTAA

Protein sequence : 
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNI
KFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYPDSSFLPPGLGGY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0542 BAD13821.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-60 99
cagG YP_003728722.1 cag pathogenicity island protein G Virulence cag PAI Protein 6e-60 99
HP0542 BAD13930.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-60 99
cagG YP_005775742.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-60 98
HP0542 BAD13875.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-60 98
HP0542 BAD13903.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-60 98
HP0542 BAD14067.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-60 98
HP0542 BAD14013.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-61 98
HP0542 BAD13794.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-61 98
cagG YP_005779051.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-61 98
HP0542 BAD13848.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-61 98
cagG YP_005774529.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-61 98
HP0542 BAD13958.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-61 98
cagG YP_005777283.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-61 98
cag21 AAR03965.1 Cag21 Virulence cag PAI Protein 1e-59 98
cag21 AAR03934.1 Cag21 Virulence cag PAI Protein 1e-59 98
cag21 AAR03904.1 Cag21 Virulence cag PAI Protein 9e-60 98
cagG AAC44700.1 CagG Virulence cag PAI Protein 8e-60 98
HP0542 BAD13985.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-59 98
HP0542 NP_207338.1 cag pathogenicity island protein (cag21) Virulence cag PAI Protein 2e-59 98
HP0542 BAD14040.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-59 97
cag21 AAR03876.1 Cag21 Virulence cag PAI Protein 2e-59 97
cagG NP_223208.1 cag island protein Virulence cag PAI Protein 6e-59 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPSH_04175 YP_001910300.1 cag pathogenicity island protein CagG VFG0301 Protein 5e-60 98