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Name : HPSH_04170 (HPSH_04170) Accession : YP_001910299.1 Strain : Helicobacter pylori Shi470 Genome accession: NC_010698 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein CagF Function : - COG functional category : - COG ID : - EC number : - Position : 812329 - 813135 bp Length : 807 bp Strand : + Note : - DNA sequence : ATGAAACAAAGTTTGCGTGAACAAAAATTATTGAAAATTTTAGAAAATGATGTTTTGACGATTTTGGATAGTTTTTCTAA TTATCTTTTTGAACTGAGAGAAGAATTGGATTTCATAGAAGAAGAAATGGAAGGCGAAATCACTGAACAAAACCTTACCA CTCTTTATGATTTTTCTAACTTCTTAGAAGACCATGTCAATGTGTTTTATGAGAATGTTTTAAATATAGATGATGTCAAA ACAGAACACCTTTATTCAGGTCTCATAGATAGTCTCAATGCTAATCTTCACTTTGTCAAGTCATTTCTCAGTAATCAGGA TTTAGACTTCCGCTTTTTTAAAGAAATAAACGATGGGCAAGATCCCCAAAAAACACTATCAAGATTGATTCCTCTTCAAA GTGGGAAAAATGACGCAAGCTCGTTTAAAGCAGATAATTCTTTTGTATCATTAGTTTATGTTTATGTTTACTTCATGCTA GAAACTATCATGCAGTCGTATAGGATTCTCAGGTTACTAGAAAAACCTATCAATAACAACATAGACGAGGATATGCAAAG CGATATAGAGAATTTTTTTGTTCAAGCGAATTTTTTAGAATACTATGTTCAGAACAAAATATACCCAACAAATCATGCCT ATGACTTCACGCATTTAATCATGGACTCCATTGTTCCTAATTGGATTCAGGTTGATATGAGCGTTGAAGCTAAAAAGAAA GAGCTTTTTGAAAAATATTTTCAAAACATTGATGAAGTAACAAACAAAATGCTCGATCAAAAAAATCAAAACAAAAATAG CGATTGA Protein sequence : MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDVK TEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKADNSFVSLVYVYVYFML ETIMQSYRILRLLEKPINNNIDEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQVDMSVEAKKK ELFEKYFQNIDEVTNKMLDQKNQNKNSD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0543 | BAD13904.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-100 | 99 |
| cagF | YP_005779050.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-100 | 99 |
| HP0543 | BAD13959.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-100 | 99 |
| HP0543 | BAD14068.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-100 | 99 |
| HP0543 | BAD13795.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 9e-101 | 99 |
| HP0543 | BAD13849.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-100 | 99 |
| HP0543 | BAD13876.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-100 | 99 |
| HP0543 | BAD14014.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-100 | 99 |
| cagF | YP_005775743.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-100 | 99 |
| HP0543 | BAD13822.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-100 | 99 |
| cagF | YP_005777284.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 2e-100 | 99 |
| cagF | AAN34510.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 8e-100 | 98 |
| cag22 | AAR03905.1 | Cag22 | Virulence | cag PAI | Protein | 5e-100 | 98 |
| HP0543 | BAD13931.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 7e-99 | 98 |
| HP0543 | BAD14041.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 3e-99 | 98 |
| cagF | NP_223209.1 | cag island protein | Virulence | cag PAI | Protein | 4e-99 | 98 |
| cag22 | AAR03966.1 | Cag22 | Virulence | cag PAI | Protein | 2e-100 | 98 |
| cagF | YP_005774528.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 5e-100 | 98 |
| cagF | AAN34512.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 3e-99 | 98 |
| HP0543 | BAD13986.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 1e-98 | 97 |
| cagF | AAN34518.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 8e-99 | 97 |
| cagF | AAN34509.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 5e-98 | 97 |
| cagF | YP_003728721.1 | cag pathogenicity island protein F | Virulence | cag PAI | Protein | 8e-99 | 97 |
| HP0543 | NP_207339.1 | cag pathogenicity island protein (cag22) | Virulence | cag PAI | Protein | 5e-99 | 97 |
| cagF | AAN34513.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 3e-99 | 97 |
| cagF | AAN34511.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 1e-99 | 97 |
| cagF | AAN34514.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 1e-98 | 97 |
| cagF | AAN34515.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 1e-99 | 97 |
| cag22 | AAR03877.1 | Cag22 | Virulence | cag PAI | Protein | 1e-98 | 97 |
| cagF | AAN34516.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 5e-98 | 96 |
| cag22 | AAR03935.1 | Cag22 | Virulence | cag PAI | Protein | 4e-98 | 96 |
| cagF | AAC44701.1 | CagF | Virulence | cag PAI | Protein | 2e-98 | 96 |
| cagF | AAN34517.1 | putative outer membrane protein CagF | Virulence | cag PAI | Protein | 2e-98 | 96 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPSH_04170 | YP_001910299.1 | cag pathogenicity island protein CagF | VFG0302 | Protein | 2e-99 | 97 |
