Name : rplS (HPSH_05920) Accession : YP_001910618.1 Strain : Helicobacter pylori Shi470 Genome accession: NC_010698 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 1163421 - 1163777 bp Length : 357 bp Strand : - Note : this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site DNA sequence : ATGAAAAACCGCTACATTCAGCAGTTTGAAGACGCTCAATTAAAAGACAAGACCATGCCAGCATTTAAAGCCGGCGATAC TTTGAGGCTTGGTATCACCATTAAAGAAGGCGAAAAAACACGAACTCAGTATTTTGAAGGCGTGTGCATTGCGATTAGAG GCAATGGCGTGGATAAGACTTTTTGCGTGCGTAAAATAGGGGCTAATAATATCGGTGTGGAGAAAATTTTCCCTTTCTAT AGCGAAAGTTTGGCGAGCGTTGAGGTGTTGCGTGTGGGTAGGGTGCGCCGCGCGAAGCTCTACTATTTGCGCGATAGGAG AGGTAAGGCAGCAAGGATTAAAGAAGTCCGCCATTAA Protein sequence : MKNRYIQQFEDAQLKDKTMPAFKAGDTLRLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEKIFPFY SESLASVEVLRVGRVRRAKLYYLRDRRGKAARIKEVRH |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 4e-24 | 52 |
rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 3e-21 | 50 |