Gene Information

Name : hrcR (ETA_05150)
Accession : YP_001906463.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 579664 - 580317 bp
Length : 654 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGAATACCGAGCAATTTGATCCGATGACCTTCGCCCTGTTCCTCGGGGCGCTGTCACTGATCCCGATGCTGATGATCGT
CTGTACCTGTTTTTTGAAGATCTCGATGGTACTGTTGATCACGCGTAATGCCATCGGGGTACAGCAGGTGCCGCCCAATA
TGGCGCTGTACGGCATTGCCCTGGCGGCCACGCTGTTCGTTATGGCCCCGGTGTTTAACCAGATGCAGCAGCAGTTTAGC
CAGTCTCCCGCCGATTTATCCAGCATGGATAGCCTGAAGAACAGCGTCACTCACGGCGTGGCCCCGCTACAGAAATTTAT
GACCCACAATACCGATCCCGACATCCTGATCCATCTCCAGGAAAACAGCGTGCGCATGTGGCCAAAAGAGATGTCGGACA
GCGTGAGCAAAGACAACCTGCTGCTGGTGATCCCCGCCTTCGTGCTGTCCGAGCTACAGGCCGGTTTTAAGATTGGCTTT
CTCATTTATATCCCGTTTATCGTCATCGATCTGATCGTGTCTAACGTGCTGCTGGCGCTCGGCATGCAGATGGTGGCGCC
AATGACGCTGTCACTGCCGCTGAAAATGCTGCTGTTCGTGCTGATCAACGGCTGGACCCGCCTGCTCGACGGCCTGTTTT
ACAGTTACCTGTGA

Protein sequence : 
MNTEQFDPMTFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFS
QSPADLSSMDSLKNSVTHGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVSKDNLLLVIPAFVLSELQAGFKIGF
LIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLINGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-97 98
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-75 75
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-67 75
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-67 75
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-70 74
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-70 74
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-70 74
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-69 74
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-66 73
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-69 73
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 5e-69 73
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-40 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-42 47
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-39 45
escR AAC31528.1 L0049 Virulence LEE Protein 7e-40 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-39 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 7e-40 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-39 45
unnamed AAL06354.1 EscR Virulence LEE Protein 8e-40 45
escR AAL57527.1 EscR Virulence LEE Protein 8e-40 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-40 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-39 44
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-40 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-39 44
escR AAC38369.1 EscR Virulence LEE Protein 7e-39 44
escR AAK26700.1 EscR Virulence LEE Protein 8e-40 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-33 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-37 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-36 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-36 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-36 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-36 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-33 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-33 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-33 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-33 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-33 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-35 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_001906463.1 type III secretion system protein VFG0044 Protein 6e-44 48
hrcR YP_001906463.1 type III secretion system protein VFG0394 Protein 1e-42 47
hrcR YP_001906463.1 type III secretion system protein VFG0188 Protein 2e-41 46
hrcR YP_001906463.1 type III secretion system protein VFG0827 Protein 4e-40 45
hrcR YP_001906463.1 type III secretion system protein VFG0715 Protein 3e-39 44
hrcR YP_001906463.1 type III secretion system protein VFG0519 Protein 4e-37 42
hrcR YP_001906463.1 type III secretion system protein VFG1773 Protein 6e-37 42
hrcR YP_001906463.1 type III secretion system protein VFG1259 Protein 4e-30 41