Gene Information

Name : ETA_03770 (ETA_03770)
Accession : YP_001906331.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Unknown
Product : P4-type integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 441832 - 442884 bp
Length : 1053 bp
Strand : +
Note : silverDB:etchr00377

DNA sequence : 
ATGGCTCTGAGTGATGTAAAGGTTCGTTCGGCAAAGCCTGAAGTAAAAGCCTGTAAACTGACTGATGGCGACGGCATGGT
TTTGCTGGCTCACCCTAACGGCTCAAAATATTGGCGGCTTCGTTATCGCTTTGGCGGCAAAGAGAAGATGCTGGCACTGG
GAAAATACCCTGAAGTGTCGTTGGCAGATGCCAGGGCTCGCCGGGATGAAGCCCGTAAGCTGTTAGCAAATGGCGTGGAT
CCCAGTGAAAACAAGAAAGCCTTTAAGGTAGAGCAGGAGCAAGAGGCTATAACGTTTGAAATGGTCGCCAGAGACTGGCA
AGCCAGTAATCAGAAATGGTCGGCATCGCATAGCGCTCGTGTATTGAAAAGTCTCGAAGATAATCTCTTTGCTGCTATTG
GTAAGCGGAACATTGCTGAATTGAAGACACGTGATCTGCTTGTACCAATCAAGGCTGTCGAGTCATCCGGGCGACTCGAA
GTCGCCGCTCGTTTGCAACAGCGAACTACCGCAATTATGCGCTTTGCTGTGCAGAGCGGATTAATCGACTACAACCCCGC
TCAAGAGATTGCCGGTGCGGTTGCTACGGCGAAAAGACAGCATCGTGCGGCGTTAGAACTTAGCCGCATTCCTGAATTAC
TTCATCGTATCGATCACTATTCTGGAAGACCATTAACTCGGCTGGCTTTGGAACTCACGCTGTTAGTTTTCATTCGTTCA
AGCGAACTGTGTTTTGCGCGCTGGTCAGAAGTGGATTTTGAAACCGCTATGTGGACGATTCCGGGAGAGCGTGAACCATC
GGAAGGAGTTAAACATTCTCAGCGTGGTTCAAAGATGCGGACGCCTCATCTTGTTCCTTTGTCGCGTCAAGCTCTCGGCA
TTTTGGAAAAGATCAAAAGTATGAGCGGAAACCGTGAGCTGATCTTCGTTGGTGATCACGATCCACGTAAACCGATGAGT
GAAAACACTGTCAATAAGGCTTTGCGGGTTATGGGCTACGATACGAAAGTTGAAGTCTGCGGGCATGGTTTTAGGACGAT
GGCGTGTAGTTGA

Protein sequence : 
MALSDVKVRSAKPEVKACKLTDGDGMVLLAHPNGSKYWRLRYRFGGKEKMLALGKYPEVSLADARARRDEARKLLANGVD
PSENKKAFKVEQEQEAITFEMVARDWQASNQKWSASHSARVLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLE
VAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELSRIPELLHRIDHYSGRPLTRLALELTLLVFIRS
SELCFARWSEVDFETAMWTIPGEREPSEGVKHSQRGSKMRTPHLVPLSRQALGILEKIKSMSGNRELIFVGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-111 78
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-107 66
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-106 66
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-106 66
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-104 66
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-105 66
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 4e-106 66
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-106 66
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-106 66
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-106 66
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-106 66
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-105 65
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-106 65
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-106 65
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-106 65
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-106 65
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-106 65
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-106 65
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-106 65
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 7e-106 65
int AAK00456.1 Int Not tested SHI-1 Protein 6e-98 65
int CAC81896.1 integrase Not tested LEE II Protein 5e-98 65
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 7e-95 60
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 7e-95 60
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-83 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-59 53
int YP_002346908.1 integrase Not tested HPI Protein 9e-77 53
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 9e-77 53
int2 NP_993013.1 integrase Not tested HPI Protein 9e-77 53
int CAB59974.1 integrase Not tested HPI Protein 6e-77 53
int CAA21384.1 - Not tested HPI Protein 9e-77 53
int CAA08754.1 integrase Not tested HPI Protein 6e-77 53
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-77 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-77 53
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-64 53
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-73 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 8e-73 51
int AAD44730.1 Int Not tested SHI-2 Protein 4e-67 43
int CAC39282.1 integrase Not tested LPA Protein 1e-67 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-67 43
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-65 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-65 43
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-65 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-65 42
int ACU09430.1 integrase Not tested LEE Protein 3e-65 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 5e-65 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 5e-65 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-56 41
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-54 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ETA_03770 YP_001906331.1 P4-type integrase VFG1536 Protein 3e-111 78
ETA_03770 YP_001906331.1 P4-type integrase VFG0626 Protein 1e-106 66
ETA_03770 YP_001906331.1 P4-type integrase VFG1693 Protein 8e-106 66
ETA_03770 YP_001906331.1 P4-type integrase VFG0598 Protein 8e-66 43
ETA_03770 YP_001906331.1 P4-type integrase VFG0783 Protein 2e-65 42