Gene Information

Name : pmrA (ETA_03360)
Accession : YP_001906290.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 392409 - 393071 bp
Length : 663 bp
Strand : -
Note : response regulator in two-component regulatory system with BasS

DNA sequence : 
ATGAAAATATTGATCGTAGAAGATGATGCGCTGCTGCAACAAGGCCTTAGCCTCGCCCTGAGTGGGGAAGGTTATGCCGT
TGACTGCGCGGCGAATGCGGCTCAAGGGGCTGCATTTTTGCAAAGCGGTCAGTATAGCCTGGTGGTGCTGGATCTCGGCC
TGCCGGATCGGGATGGAGCCCATCTGCTGCGTCAGTGGCGTAAAGAGCAGCAGGACCTGCCGGTGCTGATCCTCACTGCG
CGTGATGCGCTATCGGATCGGGTCGATGGGCTGGATGCCGGTGCCGACGACTATCTGATTAAACCCTTTGCGCTGGCGGA
GCTGAAAGCGCGCGTTCGTGCGCTTATTCGCCGCTATCAGGGAAAAAGCGATAACCTGTTGCAGCATGGCGATATCTCCC
TCAACCTCTCCTCGCAGCAGGTGGCTGTCGACCTTCAGCCGGTGGACGTCACGCCCAAGGAGTTTTCACTGTTAACCCGC
CTGCTGATGCGTATTGGTCAGACGGTGCATCGTGAAACATTGCAGCAGGATCTCTACAGCTGGCAGGATGACACCTCCTC
GAACACGCTTGAGGTTCACATTCATAATCTGCGGCGCAAGCTGGGTAAAGAGCGAATCAAAACGGTACGCGGCGTGGGTT
ACCGGCTGGAAGAACGCCCATGA

Protein sequence : 
MKILIVEDDALLQQGLSLALSGEGYAVDCAANAAQGAAFLQSGQYSLVVLDLGLPDRDGAHLLRQWRKEQQDLPVLILTA
RDALSDRVDGLDAGADDYLIKPFALAELKARVRALIRRYQGKSDNLLQHGDISLNLSSQQVAVDLQPVDVTPKEFSLLTR
LLMRIGQTVHRETLQQDLYSWQDDTSSNTLEVHIHNLRRKLGKERIKTVRGVGYRLEERP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-34 50
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-25 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_001906290.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 9e-54 65
pmrA YP_001906290.1 DNA-binding transcriptional regulator BasR NC_002516.2.879194.p Protein 7e-29 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pmrA YP_001906290.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 1e-49 58
pmrA YP_001906290.1 DNA-binding transcriptional regulator BasR VFG0596 Protein 5e-26 44
pmrA YP_001906290.1 DNA-binding transcriptional regulator BasR VFG1390 Protein 6e-25 41