|
Name : hsdR (ETA_33260) Accession : YP_001909233.1 Strain : Erwinia tasmaniensis Et1/99 Genome accession: NC_010694 Putative virulence/resistance : Virulence Product : type I restriction-modification system, restriction subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 3701463 - 3704513 bp Length : 3051 bp Strand : - Note : silverDB:etchr03312 DNA sequence : ATGGTCAGTCAGACTAACGAGCAGGCGCTGGAATCAGCCATTGAAAAGAGTCTGGTGGGGGTCAGTGCTGAAGAGCGAAA GGCGGGGCTGGCAGCACAGCACGCCGCAGCAGGGTATCTGGCGGGGTCGGCAGTCGATTTCAATAAGCAGTATGCTCTTG ACGAGCGCCTGTTCTGGCAGTATCTCAACCGGACCCATGCGCCGGAACTGGCCAAACTGCAAAAAAACCACCCGGCTGAC TGGCAGCGCAAGCTGCTTGAGCGTTATGACCGACTGATTAAAAAACACGGCATATTGCACCTGCTGAAAAAAGGGTTAAG CGTTGATGACGCGCATTTTAACCTGATGTTTCCCGCTCCGCTGGCCAGCAGCAGTGAAAAGATAAAGCAAAATTTTGCAG AAAATATATTTAGCTGCACCAGACAGGTGCGCTATTCACTGGGCAATCCGCTGCAAGAAATTGATATGGTGCTGTTTATC AACGGCATTCCCTTCGCCACGCTGGAACTTAAAAATGCCTGGACCGGGCAGACCGCGCGTTATCACGGCCAAAAACAGTA CTGCGAAGACCGGGACAGCACCCAGCCGTTACTGACTTTTGGCCGCTGCCTGGTGCATATGGCGGTGGATACCGATGAAG TCTATATGACGACCAAACTGGCGGGTAAAAGCACCTTCTTCCTGCCGTTCAATAAAGGCCACCATCATGGCCAGGGCAAC CCACCCAATCCCAACGGGCACAGAACGGCTTATCTGTGGCAGGCGATTTTTACCCGCGACAGCGTGGCCAATATCATCCA GCATTTTGTGCGTCTGGATGGCAGCAGCAAAGATGCCTTAGCAAAACGCACGCTGTTTTTCCCGCGTTATCATCAGCTTG ATGTGGTTCGGCAGCTGGTCGCCCATGCGGCGACTTATGGGGTTGGTCAAACCTATTTGATCCAACACTCGGCCGGGTCA GGCAAGTCCAATTCAATTACCTGGGCGGCCTATCAGTTAATTGAAACCTACCCCTTTTCTGCTGCCGCCGCTGCTGGCAA AAGTTTAGAACAACCGCTATTTGATTCCGTTATCGTGGTGACCGACAGACGCCTGTTGGATAAACAGCTGCGTGACAACA TCAAAGAATTTTCCGAGGTCAAAAATATCATCGCCCCGGCGTATAAATCCTCGGAGCTTAAGCAGGCGCTGGAAAGTGGT AAAAAGATCATTATCACCACCATCCAGAAATTTCCCTTTATTATTGACGGCATAGCCGATCTCAGCGACAAGCGTTTTGC GGTGATCATTGACGAAGCGCACAGCTCCCAATCCGGCTCTGCCCATGACAATATGAACCGTGCTATGGGTAAAGCGCAGG TGGAAGAGGCCGAAGACGCCCAGGATAAAATCCTACAGGCCATGAACACGCGTAAAATGCGCGGCAATGCCACCTATCTG GCCTTCACCGCCACGCCGAAAAACAGCACCCTGGAAAAATTTGGCCAATGCCAGCAGGACGGTTCGTTCAAACCTTTTCA TCTCTATTCGATGAAGCAGGCCATTGAAGAAGGTTTTATTCTCGATGTGCTGGCCAACTACACGACTTTCAGAAGCTATT ACGAGATCGAAAAGTCCATCGCCGATAATCCCGAGTTTGATAGTCAGAAAGCGCAAAAGAAATTGCGCGCTTACGTTGAG CGTAGTCAGCAGACCATCGATACCAAAGCCGAGATCATGCTTGAACACTTTGTTCCGCATATTGTGAATGCGAAGAAGCT GAAGGGGAAAGCGAAGGGCATGGTGATCACGCAGAATATCGAGGTAGCCATTCGTTACTACAAGGCCATTCAGCGTATTC TGCAACAGCAGGGCAATCCATTTAAGGTGCTTATTGCCTTCTCCGGCAGTAAAGAGGTCGATGGTATTGAATATACCGAA GCGGATATCAATGGCTTCGCGGAAAATGATACCAAAGAGGCCTTTGATAGCGATGAGTTTCGCCTGCTGGTAGTGGCCAA TAAATACCTGACCGGCTTTGACCAGCCTAAATTATGTGCCATGTACGTCGACAAGAAGTTAACCGGCGTGCTGTGCGTAC AGGCGCTCTCGCGTTTAAACCGAAGTGCGCCCAGGTTGGGTAAAAAAACCGAAGACCTGTTTGTGCTGGATTTCTTCAAC TCTGTCGAAGATGTCCAGACGGCATTTAACCCCTTCTATACCGCCACGTCGCTGTCCCAGGCGACCGATGTCAACGTGCT TCATGAACTGAAGGATGAGATGGATGAGGTGGGCGTGTATGAGTGGTACGAAGTCGAAGATTTTGTTGTGCGCTATTTCA ATAATGAAGATGCGCAAACGTTAAGCCCCATTATAGACAGGGCGACGGCACGCTTTGAAAGCGAACTGGAACTGGAGCCA GAGCAAAAAATAGATTTTAAAATTAAGGCCAAGCAATTTGTTAAGATTTACGGCCAGATGGCATCGATCATGCCTTATGA GATTGTGGCATGGGAAAAATTGTTCTGGTTTCTGAAGTTCCTGATCCCTAAGCTGATCGTAGAAGATCCGGACGCAGATG CGTTCGACAAATTACTGGAGTCGGTAGATTTAAGCTCTTATGGCTTACAGCGGGTCAGGCTGGGTCATGGTATCAGGCTG GATGCCGCTGAAACGGAAGTTGATCCTCAGAACCCGAATCCCAGAGGTGCGTACGGTACAGAAAGAGAGGCCGATCCGCT GGATGATATTATTCGCAACTTCAATGAACGCTGGTTCCAGGGGTGGAGCGCCACGCCAGAGGAGCAGAAAGTTAAGTTTG TGAATATGGTCAATAGCGTGCGCAGCCATCCGGACTTTGCAGCCAAGTATCAAAATAACCCGGACCCGCACAACCGGCAG CTGGCATTTGACAAAATGCTGAGGGAAATTATGCTACTGCGCCGGAAAGATGAGCTTGAACTCTATAAGCTTTACGCCAA TGACCCGGCATTTAAAGCCTCATTGACCCAAAGCATGCAGCATATGCTCGACCAGGGCGGCGGAATGGGTGCGCAACCCC CGGCACAATAA Protein sequence : MVSQTNEQALESAIEKSLVGVSAEERKAGLAAQHAAAGYLAGSAVDFNKQYALDERLFWQYLNRTHAPELAKLQKNHPAD WQRKLLERYDRLIKKHGILHLLKKGLSVDDAHFNLMFPAPLASSSEKIKQNFAENIFSCTRQVRYSLGNPLQEIDMVLFI NGIPFATLELKNAWTGQTARYHGQKQYCEDRDSTQPLLTFGRCLVHMAVDTDEVYMTTKLAGKSTFFLPFNKGHHHGQGN PPNPNGHRTAYLWQAIFTRDSVANIIQHFVRLDGSSKDALAKRTLFFPRYHQLDVVRQLVAHAATYGVGQTYLIQHSAGS GKSNSITWAAYQLIETYPFSAAAAAGKSLEQPLFDSVIVVTDRRLLDKQLRDNIKEFSEVKNIIAPAYKSSELKQALESG KKIIITTIQKFPFIIDGIADLSDKRFAVIIDEAHSSQSGSAHDNMNRAMGKAQVEEAEDAQDKILQAMNTRKMRGNATYL AFTATPKNSTLEKFGQCQQDGSFKPFHLYSMKQAIEEGFILDVLANYTTFRSYYEIEKSIADNPEFDSQKAQKKLRAYVE RSQQTIDTKAEIMLEHFVPHIVNAKKLKGKAKGMVITQNIEVAIRYYKAIQRILQQQGNPFKVLIAFSGSKEVDGIEYTE ADINGFAENDTKEAFDSDEFRLLVVANKYLTGFDQPKLCAMYVDKKLTGVLCVQALSRLNRSAPRLGKKTEDLFVLDFFN SVEDVQTAFNPFYTATSLSQATDVNVLHELKDEMDEVGVYEWYEVEDFVVRYFNNEDAQTLSPIIDRATARFESELELEP EQKIDFKIKAKQFVKIYGQMASIMPYEIVAWEKLFWFLKFLIPKLIVEDPDADAFDKLLESVDLSSYGLQRVRLGHGIRL DAAETEVDPQNPNPRGAYGTEREADPLDDIIRNFNERWFQGWSATPEEQKVKFVNMVNSVRSHPDFAAKYQNNPDPHNRQ LAFDKMLREIMLLRRKDELELYKLYANDPAFKASLTQSMQHMLDQGGGMGAQPPAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VPI2_0013c | ACA01830.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 75 |
| VC1765 | NP_231400.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 75 |
| VC0395_A1363 | YP_001217306.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 0.0 | 75 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hsdR | YP_001909233.1 | type I restriction-modification system, restriction subunit | VFG1098 | Protein | 0.0 | 75 |
