Gene Information

Name : soxS (ETA_30790)
Accession : YP_001908994.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Resistance
Product : DNA-binding transcriptional regulator SoxS
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 3445363 - 3445788 bp
Length : 426 bp
Strand : +
Note : regulates genes involved in response to oxidative stress

DNA sequence : 
ATGCATGACGACATCATTAATACCCTGACCCACTGGATCGACAACAATCTGGGTAAAAACCTGTCGATTGATGAAGTGGC
GGCAAAATCGGGCTACTCGAAATGGCATCTGCAGCGCATGTTCCGCACCGTCACAAAACAGACGCTGGGCGGATATATAC
GCGAGCGCCGTTTGACCCTGGCCGCCGAAGCGCTGCGCCAGAGCCACCGTCCGGTATTTGATATCGCCATGCAGTATGGC
TACGATTCGCAGCAGACCTTCTCACGGGTATTTCGTCGTCAATTTTCGCAAACGCCAACAGATTACCGTAACACCATGCG
TCGCCAGAGGTTGCAGCGCAGCAGCTGGAATTTTGACTGTAGTGACTACGCTGTCAGCAGCCTCACCCGGCAGCCGCATC
GCAAAGCCAGTCCGACCTGTAACTGA

Protein sequence : 
MHDDIINTLTHWIDNNLGKNLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLTLAAEALRQSHRPVFDIAMQYG
YDSQQTFSRVFRRQFSQTPTDYRNTMRRQRLQRSSWNFDCSDYAVSSLTRQPHRKASPTCN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-32 67
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 1e-22 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 1e-22 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP000647.1.gene4499. Protein 1e-33 69
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS BAC0371 Protein 2e-32 67
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS NC_002695.1.914293.p Protein 2e-32 67
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene4488. Protein 7e-33 67
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP001918.1.gene327.p Protein 1e-33 67
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP000034.1.gene4505. Protein 4e-32 66
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene612.p Protein 2e-26 50
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP000647.1.gene1624. Protein 6e-23 48
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS NC_010558.1.6276025. Protein 5e-23 48
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP001918.1.gene2033. Protein 9e-23 47
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS NC_002695.1.917339.p Protein 1e-22 46
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene1637. Protein 1e-22 46
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS BAC0560 Protein 1e-22 46
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS CP000034.1.gene1596. Protein 1e-22 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS VFG0585 Protein 7e-33 67
soxS YP_001908994.1 DNA-binding transcriptional regulator SoxS VFG1038 Protein 4e-23 48