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Name : pmfC (ETA_30200) Accession : YP_001908935.1 Strain : Erwinia tasmaniensis Et1/99 Genome accession: NC_010694 Putative virulence/resistance : Virulence Product : outer membrane usher protein PmfC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3366281 - 3368755 bp Length : 2475 bp Strand : - Note : silverDB:etchr03007 DNA sequence : ATGTTGGTAATAATAAAAACAAAAATAAAAAGCCTTACCCTAAAGCTAATCTGTGTCTGCTACGCGGCAACGGCGTATGC AGACGATCGTATTGATTTTAATACCGACGTGCTTGATGCGGCAGATCGTACCCATATCGATCTATCGCGTTTTTCAACCG ATAATTATATTCCCCCCGGATATTACCTGCTGGATATTCATGTTAATGGTCAGCCCATTGGCCAGGAGCGAATTCGTTAC GTAGAAACATCTGAAGGAAAGATGTCTCAAGCGTGTATCAGTAGCGAGCTGGTGGATAAATTGGCGTTAAAAGAGGAGGC GCGGATGAAAGTGACGCAACTCCACGAAAACTGTTATTCCCTGCAAAGTTTACCCGGGGCTAAATTGAGGAACTACGCTG GCGTGCTGGAAATCAACGTGCCGCAGGCGTGGATGAAATATAACGATGCCAACTGGACCCCGCCAGAGCGCTGGGACAAC GGTATCGCGGGGCTGCTTTTCGACTATAGCCTGAATGGACAGATAACCCGACAATTCGACGGAAGCCGCAACTACAGCTC GGTATCGGGCTATGGGCAGACGGGTGCCAATATTGGCTCCTGGCGTCTGCGCGGTGAATATCAGACCAGTTATTACAGTA ACAATCATCAGGTAAGTTTCGACTGGAACCAGATTTACGCCTACCGGCCGCTGCCGATGATGGCAGCCAAATTAACCCTG GGAGAGATCTATCTCAACTCGCAGGTCTTCGACACGCTGCGCTTTACCGGGATCAACCTCGCCAGCGATGAACGGATGCT GCCTCCCGCACTGCAAGGCTATGCGCCGGAAGTGCACGGTATTGCGCGCAGTAATGCCAAAGTCACGGTAAGCCAGAACG GACGCGTGGTTTATGAAACCACCGTGCCTGCCGGTCCGTTCAATATTCAGGATCTGCGCAGTTCGGTGCGCGGTACGCTT GATGTGCGCGTAGAAGAGCAGGATGGTTCAACCTCTACCTTCCAGGTAAACACCGCCAATATTCCGTATCTCACTCGGCC GGGCTACGTGCGTTACAATTTTTCCGCCGGCACCCCCTCGGTCTATAACCATAAGCTGCAGGGGCCATCGTTTATCTCCG GTGATTTTTCCTGGGGGGTCAGCAACGCCTGGTCGCTTTATGGCGGTGGACAGAGCTCCGGCGAGGAATACTCCGCTGCA TCGATCGGTATTGGGCGCGATTTAAGCTTGCTGGGGGCTATTTCTGTCGACGCCACTGAATCTTTGAGCCGACAGCCCGA CGGTGAACGGCTTCACGGCACCTCCTACAAGCTGAGCTATGCGAAAACGTTCGACGAATATAACAGCTCAATCACCTTCG CGGGTTACCGCTTCTCGCAGGAAGATTTTCGCTCCATGGCGCAGTACCTCGAACGACGCTATCGCAATGACAGCCATCTG GGGCGCGAAAAAGAGATGTATACCATCACGGCGAACAAAACCTTCTGGGCTGACGAAGCGGCTAAGGCCACCAGCGTCTT TCTGACCTATACGCACCAGAACTACTGGAACAGGCTTAGCCGCGATCGCTACGGCATGTCCGTTAGCCGTACCTTCCGCG TGGGGGATATCAGCGGTATTAGCGCCGGCCTCTCGGCATACCGTTCCGATTACCTGGGGCGTACGGATGATTCGATCTCA TTTTCTCTGTCACTGCCAATGGGTGATAGCAAATGGGCGGGGCTGGATATCCAGTCCAGTAACGGCAAAAGCAGCCCGAT GGCGTCTTACACCAATAACAGTGACTACAACAACCTGTGGCGCATTCGTGCCGGTGCCAGCCAGCACGGAAATGCCAGCG CTGATGGTTACTATCAGCGCCGTTCACAGCTGGCGGAGATCAATACCAACGCCAGCTATCAGCAAAACCGCTATATGGCG CTTGGCACTACGCTGCGCGGCGGCTTTACCGCCACGCGGCATGGTGCGGCGATGCATAACAGCAGCGCAACGACGAGCAC GGCACGCATGATGGTGGATACCAACGGCATCGGCGGCGTGCCGCTGAACGGCATGAAGTCGAGGACCAACCGCTTTGGCA TCGCCGTGGTACCGGACGTGGTCAGCTACAACAGCTTCGATACTCGTGTTGATGTTGACGCTCTGGACAACGATATCGAG CCGTCAAAAGCCATCAGCACCACCACGCTCACCGAAGGGGCGATTGGTTACCAAATCTTCGGCATGGCGAAGGGCATGAA GATGATGGCAACGTTGCGTCTTGCGGATAACAGCGTGCCGCCATTTGGCGCAGAAGTTTATAACGCGGACGGCGTTAGCG TGGCAATGGTACTGGAAGACGGAAAAGCATGGCTCGCCGGAGTCAATCCGGACGAAACCCTGAACGTCACCTGGGGTGGC AAGCAGCGGTGCCAGGTGACGCTACCGCCAGGCTCCAGCGAACAACGCCCGGACACGTTGCTGCCGTGCCGCTGA Protein sequence : MLVIIKTKIKSLTLKLICVCYAATAYADDRIDFNTDVLDAADRTHIDLSRFSTDNYIPPGYYLLDIHVNGQPIGQERIRY VETSEGKMSQACISSELVDKLALKEEARMKVTQLHENCYSLQSLPGAKLRNYAGVLEINVPQAWMKYNDANWTPPERWDN GIAGLLFDYSLNGQITRQFDGSRNYSSVSGYGQTGANIGSWRLRGEYQTSYYSNNHQVSFDWNQIYAYRPLPMMAAKLTL GEIYLNSQVFDTLRFTGINLASDERMLPPALQGYAPEVHGIARSNAKVTVSQNGRVVYETTVPAGPFNIQDLRSSVRGTL DVRVEEQDGSTSTFQVNTANIPYLTRPGYVRYNFSAGTPSVYNHKLQGPSFISGDFSWGVSNAWSLYGGGQSSGEEYSAA SIGIGRDLSLLGAISVDATESLSRQPDGERLHGTSYKLSYAKTFDEYNSSITFAGYRFSQEDFRSMAQYLERRYRNDSHL GREKEMYTITANKTFWADEAAKATSVFLTYTHQNYWNRLSRDRYGMSVSRTFRVGDISGISAGLSAYRSDYLGRTDDSIS FSLSLPMGDSKWAGLDIQSSNGKSSPMASYTNNSDYNNLWRIRAGASQHGNASADGYYQRRSQLAEINTNASYQQNRYMA LGTTLRGGFTATRHGAAMHNSSATTSTARMMVDTNGIGGVPLNGMKSRTNRFGIAVVPDVVSYNSFDTRVDVDALDNDIE PSKAISTTTLTEGAIGYQIFGMAKGMKMMATLRLADNSVPPFGAEVYNADGVSVAMVLEDGKAWLAGVNPDETLNVTWGG KQRCQVTLPPGSSEQRPDTLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 2e-159 | 46 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 3e-158 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 5e-157 | 45 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 7e-157 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-157 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 4e-158 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 8e-158 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pmfC | YP_001908935.1 | outer membrane usher protein PmfC | VFG1548 | Protein | 2e-158 | 45 |
| pmfC | YP_001908935.1 | outer membrane usher protein PmfC | VFG0884 | Protein | 5e-158 | 45 |
| pmfC | YP_001908935.1 | outer membrane usher protein PmfC | VFG0895 | Protein | 3e-158 | 45 |
