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Name : fimD (ETA_28660) Accession : YP_001908782.1 Strain : Erwinia tasmaniensis Et1/99 Genome accession: NC_010694 Putative virulence/resistance : Virulence Product : outer membrane usher protein, FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3191316 - 3193943 bp Length : 2628 bp Strand : - Note : silverDB:etchr02854 DNA sequence : ATGTCATACCTGGATTACGGAGCAGGCAGCGATAAAATGACAACACTCGACACCCGGGGGAAGACCCTGAAAAGAACGAT GCTTACGCCGCTAGCGATGCTACTGGTGGCATCGACATTCTCTGCGCGTGCAGACAACTACTTCAACCCCCGGTTCCTGT CTGACGATCCTGAGTCCGTTGCCGACCTGTCCGGTTTTGAGAAAGGGCTGGAGGCCCCCCCCGGGACCTATCGCGTAGAC ATCTATATGAACGATGGCTACATGTCTACCCGGGACGTCACCTTTGAATACTCCACTGACGGCAAACGGCTGGAACCCTG CCTGACCCGTTCGCAGCTGGCGACACTCGGGGTGAATACCCTGACCCTGCCGGACATTGCGGTGATGAAGAGTACCGCGT GTGTCCCCTTTACCCGGTTGATTGCTGATTCCTCAAGCAGCTTTGACGTTGGCCGCCAGCGGCTCAATATCAGCGTCCCA CAGGCGTTTATGGGCAATCAGGCTCGTGGCTACATTGCTCCGGAGCTCTGGGATAACGGTATTACCGCCGGCCTGCTCAA CTACAACTATACCGGCAGCGAAGTGCGCAGTCAGAATGGAGGAACGCGTAACTACTCGTACCTTAACCTGCAAAGCGGGC TTAACGTTGGTGCATGGCGGCTGCGTGATAACTCTACCTGGAGTTACAGCAGCGGGGCGGCATCGAACGAGAATCGCTGG CAGCACGTCAATACCTGGCTTGAGCGTGACATTACGGCCTGGCGCAGCCGCCTGACCGTGGGTGACAGCTATACCGCGGG CGATATCTTTGAGGGTATCAATTTCCGCGGCATTCAGGTGGCCTCTGATGACAATATGCTTCCCGACAGTCAGCGTGGAT TCGCTCCTGTGATCCATGGTATTGCGCGCGGTACGGCGCGCGTTTCGATCAAACAAAACGGCTATGAAATCTACCAGACT ACCGTCCCGCCGGGCGCATTTACCATCGGCGATCTTTATGCGGCGGGAAACAGCGGCGATCTGCAGGTAACGGTTAAAGA GGCGGATGGATCTGTTCAGGTGTTTACCGTGCCGTTCTCATCCGTTCCGATGTTACAGCGAGAAGGGCAGGTCAAGTTTG CGGCTACTGCGGGACAGTATCGCAGTGGCAACGGTATGCAGGACAAACCCACGTTTTTCCAGGGAACGTCGCTTTGGGGG CTGCCCGACGGCTGGACGGTTTACGGGGGCACGCGTGCGTCCAGCGATTACCGTTCGTTTAACGTCGGCCTGGGGAAAAA CCTGGGTTATCTGGGGGCCGTTTCCGCGGATATCACTCAGGCAAACGCCACCCTGCCCGATGACACCCGGCACCAGGGGC AGTCCCTGCGCTTTCTTTACAGCAAGTCGCTTAACGACACGGGAACCAATCTCCAGCTGGTTGGATACCGTTATTCAACG CAGGGTTTCTACACCCTGGCGGATACCGCCTGGCACCGTATGAGCGGCTACACGGTGGTCAGTGAAGATGGCATCGTCAA CGTAAAGCCGAAATTCACGGATTACTACAATCTCAACTACAGCAAACGTGGCCGTCTTCAGGCTACGGTGACGCAACAGG TCGGACGGTCATCGACCATCTATCTCACCGGCAGCCACCAGAGCTACTGGAACACCGGGCGTGCGGACGAGCAGCTGCAG ATTGGCTATAACAGCACGATAACGGATATCAGCTGGGGCCTGAGCTACAGCCTGTCCAAAAATGCCTGGAGTGATGATAA GGACCAGCTGCTGGCGTTCAATATTAATATACCGTTCAGCCACTGGATGCGTTCGGATACCCGTTCGGCATTTAAAAACG CCAGTGCAAGCTACAACACATCAACCGACTTCAGAGGACGTACGGCGGGTACTGCCGGGCTTTACGGTACCCTGCTTGAA GATAACAACCTCAGTTACAGCGTGCAAACGGGGTACGCCAGCGGCGGGTCGGGGACATCGGGGGGAACCGGCAATGCGGG GCTTAACTATCGTGGCACCTACGGTAACAGCAACATCGGCTACAGCCACAGCGGCGACTACCGCCAGTTGTATTACGGTG TCAGCGGCGGCGTGCTGGCGCATGAAAATGGCGTGACCTTCAGTCAGCCTCTCAACGACACCTCGGTGTTGATAAAAGCG CCGGGAGCGGGACACGTTGGCGTTGAGAATCAGACCGGCGTGCGCACCGACTGGCGGGGTTACGCGGTACTGCCTTATGC CATGGATTATCGCGAAAACCGTGTCGCTCTTAATACCGACTCTCTGGCCAATAATGTCGAGCTGGAAGAAGCGGTAGTGA GCGTGGTGCCGACACGCGGCGCCGTGGTGCGCGCGGAGTTTAAGGCGCGTGTCGGGATGAAAGTCCTGATGACGCTGACC CGGGACGGGAAACCCGTTCCCTTTGGCTCCATCGTATCCTACGAGGCCGGGCAGTCGGGAAGCATTGTTGCAGATGGCGG GCAGGTTTATCTGACAGGACTGTCACCCGCAGGAAAAATCAAGGTTAAGTGGGGCGAGAGCGCAAATGAAAGCTGTACGG CAACATACAGCCTGCCCGCCGACAGCCAGAACAGGGCGCTGAGCTATTCCTCAGCCGTATGCCGGTAA Protein sequence : MSYLDYGAGSDKMTTLDTRGKTLKRTMLTPLAMLLVASTFSARADNYFNPRFLSDDPESVADLSGFEKGLEAPPGTYRVD IYMNDGYMSTRDVTFEYSTDGKRLEPCLTRSQLATLGVNTLTLPDIAVMKSTACVPFTRLIADSSSSFDVGRQRLNISVP QAFMGNQARGYIAPELWDNGITAGLLNYNYTGSEVRSQNGGTRNYSYLNLQSGLNVGAWRLRDNSTWSYSSGAASNENRW QHVNTWLERDITAWRSRLTVGDSYTAGDIFEGINFRGIQVASDDNMLPDSQRGFAPVIHGIARGTARVSIKQNGYEIYQT TVPPGAFTIGDLYAAGNSGDLQVTVKEADGSVQVFTVPFSSVPMLQREGQVKFAATAGQYRSGNGMQDKPTFFQGTSLWG LPDGWTVYGGTRASSDYRSFNVGLGKNLGYLGAVSADITQANATLPDDTRHQGQSLRFLYSKSLNDTGTNLQLVGYRYST QGFYTLADTAWHRMSGYTVVSEDGIVNVKPKFTDYYNLNYSKRGRLQATVTQQVGRSSTIYLTGSHQSYWNTGRADEQLQ IGYNSTITDISWGLSYSLSKNAWSDDKDQLLAFNINIPFSHWMRSDTRSAFKNASASYNTSTDFRGRTAGTAGLYGTLLE DNNLSYSVQTGYASGGSGTSGGTGNAGLNYRGTYGNSNIGYSHSGDYRQLYYGVSGGVLAHENGVTFSQPLNDTSVLIKA PGAGHVGVENQTGVRTDWRGYAVLPYAMDYRENRVALNTDSLANNVELEEAVVSVVPTRGAVVRAEFKARVGMKVLMTLT RDGKPVPFGSIVSYEAGQSGSIVADGGQVYLTGLSPAGKIKVKWGESANESCTATYSLPADSQNRALSYSSAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 66 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 62 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 7e-135 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimD | YP_001908782.1 | outer membrane usher protein, FimD | VFG0876 | Protein | 0.0 | 65 |
| fimD | YP_001908782.1 | outer membrane usher protein, FimD | VFG1645 | Protein | 0.0 | 62 |
| fimD | YP_001908782.1 | outer membrane usher protein, FimD | VFG0912 | Protein | 0.0 | 62 |
| fimD | YP_001908782.1 | outer membrane usher protein, FimD | VFG0446 | Protein | 1e-178 | 48 |
| fimD | YP_001908782.1 | outer membrane usher protein, FimD | VFG0454 | Protein | 1e-163 | 43 |
