Gene Information

Name : spaP (ETA_26870)
Accession : YP_001908607.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Virulence
Product : surface presentation of antigens protein SpaP
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2991892 - 2992563 bp
Length : 672 bp
Strand : -
Note : part of a type III secretory system probably involved in invasion into eukaryotic cells

DNA sequence : 
ATGTTGAGCAATGATATTTCTTTAATTGCGCTACTCTCCTTTTTCACATTACTGCCTTTTCTTATCGCAGGTGGAACCTG
TTTTATTAAGTTTTCCATCGTAATGGTAATGGTCCGTAATGCCCTAGGGATACAACAAGTTCCATCAACATTAACGCTGA
ACGGCATTGCGCTCATCTTAACCGCTTTTGTGATGATGCCAGTATGTCAGAAGGTATCGGGCTATATAGAATCTCATCAT
ATTGATTTCAATAACAGCGCCTCCATCAATCAGCTGATGGATCAGGGGTTGGGAAGTTATCGGGATTACCTTGTACATTA
TTCCGACCATGAACTGATCCGTTTTTTCAATCAGGTACAGCAGCAAAAAACAGGAGAAACAATCCCCGAAGTTGAAGAGC
ATGAATTACGTTCTCTTTCTCTGATTACGCTTATGCCCGCATACGCGCTTAGTGAAATTCAAAGCGCCTTTAAAATTGCC
TTTTACCTTTATGTTCCATTTGTCGTCATTGATATGGTGGTATCCAGCATCTTGCTGGCGTTGGGGATGATGATGATGAG
CCCGGTGACCATCTCAATTCCCATTAAACTGATCCTGTTTGTTTCCATGAATGGCTGGAGTCTACTCACTAAGGGAATGA
TCGCACAATATGCCGATCTGATGACGTCATGA

Protein sequence : 
MLSNDISLIALLSFFTLLPFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALILTAFVMMPVCQKVSGYIESHH
IDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQQQKTGETIPEVEEHELRSLSLITLMPAYALSEIQSAFKIA
FYLYVPFVVIDMVVSSILLALGMMMMSPVTISIPIKLILFVSMNGWSLLTKGMIAQYADLMTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 1e-76 76
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-60 61
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-60 61
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 8e-60 60
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 8e-60 60
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 3e-64 59
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 7e-63 58
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-57 51
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-40 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-41 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-41 42
escR AAK26700.1 EscR Virulence LEE Protein 3e-41 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-41 42
escR AAL57527.1 EscR Virulence LEE Protein 3e-41 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-41 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-41 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-41 42
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-41 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-41 42
escR AAC38369.1 EscR Virulence LEE Protein 3e-40 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-41 42
escR AAC31528.1 L0049 Virulence LEE Protein 4e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP YP_001908607.1 surface presentation of antigens protein SpaP VFG0551 Protein 1e-60 61
spaP YP_001908607.1 surface presentation of antigens protein SpaP VFG2455 Protein 2e-63 59
spaP YP_001908607.1 surface presentation of antigens protein SpaP VFG1773 Protein 3e-66 59
spaP YP_001908607.1 surface presentation of antigens protein SpaP VFG1012 Protein 3e-60 56
spaP YP_001908607.1 surface presentation of antigens protein SpaP VFG0827 Protein 2e-41 42
spaP YP_001908607.1 surface presentation of antigens protein SpaP VFG0715 Protein 1e-40 42