Gene Information

Name : prgK (ETA_19130)
Accession : YP_001907845.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Virulence
Product : type III secretion system
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 2168205 - 2168984 bp
Length : 780 bp
Strand : +
Note : silverDB:etchr01902

DNA sequence : 
ATGTCAAAAAAGAATACTCCTACATTTTTTATTATTCTCACAGCTTTTTTATTGGCTGCTTGTGATAATGAAAGGCTGCT
AGAAAATCTCACTCAGGATCAGGCCAACCAAGTTTTGGCAATCCTTCAACAGCATAATATATCTGCTAATAAAAGCGGTA
ACCTTAAAGCAGGCTACACGATTCAAGTCGATGAAATCGAAAACACTGCTGCTCTTTCTATCATAAGTCAATATCAGCTT
CCGTGGCCTGCTGACATTCAAATTGGACAAGCATTTCCTGATGGTGCACTCGTTGCCTCACCGAATGCAGAACAGGTTCG
CGTCCTTTCTCTGCTTGAGCAAAGGTTGGGGCAGTCATTGAGAACTATTGCGCAAGTTGTTAACGCTCGTGTGCATATCA
GCTATCCCCCCTTAAAAAATGGAATGGCAGATAAAACATTAACCAACCATGTCGGCGTGTTGATTTCTTATAAGGGTGAT
ATCAACCAGAGTCTTTTCATTCCACAAGTCAAATCATTAATAAAAAACAGTCTTGATGATATTAAATATGAAAACATTTC
AGTGGTACTTTTCGATACACCTCCAATCCAGTACACACAACCATTGAAGTTATCCAGTCCATCACCATCTAAATGGCTGA
TATTCACAACGGCAGTTGTTCTACCGGCAGCTGCAATTTTTATATTTTTACTTAAGCGCGTTTCGCGCCGATTTAAAGTA
GGAGATGTCATGAATAAATCTAAACGTAATAGCCAGGGGTCAGTGGAAAATGCCCCTTGA

Protein sequence : 
MSKKNTPTFFIILTAFLLAACDNERLLENLTQDQANQVLAILQQHNISANKSGNLKAGYTIQVDEIENTAALSIISQYQL
PWPADIQIGQAFPDGALVASPNAEQVRVLSLLEQRLGQSLRTIAQVVNARVHISYPPLKNGMADKTLTNHVGVLISYKGD
INQSLFIPQVKSLIKNSLDDIKYENISVVLFDTPPIQYTQPLKLSSPSPSKWLIFTTAVVLPAAAIFIFLLKRVSRRFKV
GDVMNKSKRNSQGSVENAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaJ AAS66833.1 YsaJ Not tested SSR-1 Protein 6e-55 51
prgK YP_217790.1 cell invasion protein Virulence SPI-1 Protein 4e-29 45
prgK NP_461792.1 needle complex inner membrane lipoprotein Virulence SPI-1 Protein 4e-29 45
prgK NP_457265.1 pathogenicity 1 island effector protein Virulence SPI-1 Protein 4e-29 45
prgK NP_806474.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 4e-29 45
prgK AAS66872.1 PrgK Virulence SSR-2 Protein 7e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
prgK YP_001907845.1 type III secretion system VFG0533 Protein 2e-29 45
prgK YP_001907845.1 type III secretion system VFG1787 Protein 8e-34 42