Gene Information

Name : sicA1 (ETA_18970)
Accession : YP_001907830.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Virulence
Product : type III secretion chaperone
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2956
EC number : -
Position : 2152572 - 2153087 bp
Length : 516 bp
Strand : -
Note : silverDB:etchr01886

DNA sequence : 
TTGACCCCGCAAGACGAATTTAATAATGATATTCCGCTCGATGAATACTCAGATAGTCTTATCGAGGCAATTCAAAACGG
GGCGACACTTAAAGATGTGCAGGGCGTATCAACTGAGACAATGAATGATATTTATAAAATTGCATACGACTTCTATCATC
ATGGCAAGCTCGATGATGCAGAGTCTCTTTTTAGATTTCTCTGCATTTATGATTTTTATAATTCGGAGTATTCAATGGGC
TTGGCCGCTGTGTATCAATTAAAAAAGGAGTATAGAAAGGCCATTGACTTCTATGCTTTAGCCTATTCTCTGGCAGAAGA
AGATTATCGTCCTATGTTTTATGCAGGGCAATGTAATTTAATGCTGCGTAATGAAGCACTGGCCCGAAAATGTTTTTCGA
TAGTGGTTAAACGATGTCGGATTTTACGACTTAAAGAAAAAGCTCAAACAATTCTTATAGCGCTGGATGAAATTAGCGAT
GGTTCAGAAGTTAGTCCACTAAATGAAAGTATTTAA

Protein sequence : 
MTPQDEFNNDIPLDEYSDSLIEAIQNGATLKDVQGVSTETMNDIYKIAYDFYHHGKLDDAESLFRFLCIYDFYNSEYSMG
LAAVYQLKKEYRKAIDFYALAYSLAEEDYRPMFYAGQCNLMLRNEALARKCFSIVVKRCRILRLKEKAQTILIALDEISD
GSEVSPLNESI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 3e-38 49
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 3e-38 49
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 3e-38 49
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 3e-38 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sicA1 YP_001907830.1 type III secretion chaperone VFG2451 Protein 4e-46 56
sicA1 YP_001907830.1 type III secretion chaperone VFG1769 Protein 3e-35 54
sicA1 YP_001907830.1 type III secretion chaperone VFG0547 Protein 8e-39 49
sicA1 YP_001907830.1 type III secretion chaperone VFG0988 Protein 2e-37 48