Gene Information

Name : sitD (ETA_14040)
Accession : YP_001907343.1
Strain : Erwinia tasmaniensis Et1/99
Genome accession: NC_010694
Putative virulence/resistance : Virulence
Product : iron ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1591927 - 1592763 bp
Length : 837 bp
Strand : -
Note : silverDB:etchr01394

DNA sequence : 
ATGAGCCTGACAGAACTGCTGCTGAGTCCGTTTCAGTTTGATTTTATGAATACAGCGCTGGCTATCTCGGTGATTGTCGC
CATTCCCTGCGCCCTGCTCTCCAGCTTTATGGTGATTAAAGGCTGGTCGCTGATGGGCGACGCCATGAGTCATGCGGTCT
TCCCCGGCGTGGTGCTGGCCTGGATACTCGGTATTCCTCTGGCTATTGGGGCATTCTGCGCCGGGCTGTTCTGCGCGCTG
GCGACCGGCTATGTGAAGGAAAACAGCCGCATCAAGCAGGATACCGTGATGGGCATCATCTTCTCCGGGATGTTCGCCGC
CGGTCTGGTTCTGTATATCGCGGTGAAACCCGAGGTGCATCTCGACCATATTCTGTTCGGCGATATGCTCGGTATCTCCA
CCAGCGATTTGCTGCAAAGTGCGGTGATTGCCAGCGTGATTGCACTTATCGTTGGCATGAAATGGCGCGATTTGGTGCTG
CATGCTTTTGACGCCCAGCAGGCGAAAGCGTGCGGATTGAACACCACACTACTGCACTACGGCTTGCTAAGCATGATCGC
ACTGACCATCGTCGCTACGCTGAAGGCAGTGGGAATTGTGTTGTCAATCGCGCTGCTGATCGCTCCCGGGGCCATCGCCA
TTCTGTTAATGCGCACCTTCTCATCGGTAGTGATCTGCGCACTACTGCTGGCCGTCACGGTCTGCTTTAGCGGTACGTAT
CTGTCATTCTTCCTGGACAGCGCCCCCGGCCCAACCATCGTGGTGCTGTTCGCCCTGCTATTTATCGTGGCGTTTATGTA
TTCTCTGCGCCGCGAGCGCAGGATAGTGTTGAGCTGA

Protein sequence : 
MSLTELLLSPFQFDFMNTALAISVIVAIPCALLSSFMVIKGWSLMGDAMSHAVFPGVVLAWILGIPLAIGAFCAGLFCAL
ATGYVKENSRIKQDTVMGIIFSGMFAAGLVLYIAVKPEVHLDHILFGDMLGISTSDLLQSAVIASVIALIVGMKWRDLVL
HAFDAQQAKACGLNTTLLHYGLLSMIALTIVATLKAVGIVLSIALLIAPGAIAILLMRTFSSVVICALLLAVTVCFSGTY
LSFFLDSAPGPTIVVLFALLFIVAFMYSLRRERRIVLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-87 74
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-88 74
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-88 74
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-87 74
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-87 74

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_001907343.1 iron ABC transporter BAC0352 Protein 4e-88 74
sitD YP_001907343.1 iron ABC transporter BAC0442 Protein 2e-59 53
sitD YP_001907343.1 iron ABC transporter BAC0441 Protein 4e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_001907343.1 iron ABC transporter VFG0528 Protein 3e-88 74