Gene Information

Name : xerD1 (xccb100_0369)
Accession : YP_001901775.1
Strain : Xanthomonas campestris B100
Genome accession: NC_010688
Putative virulence/resistance : Unknown
Product : tyrosine recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 401078 - 402061 bp
Length : 984 bp
Strand : +
Note : -

DNA sequence : 
ATGACGCGTCTGACCCCCAAGCTGTTGGATCAGGTCCGTGGTCGGCTGCGGCTTCGCCACTACAGCCTGCGCACCGAGCA
GGCGTATGTGGGCTGGATCCGACGCTTCATCCTGGCCAACGGTAAACGGCATCCAGCGCAGATGGGGCAGGCAGAGGTCG
AGGCGTTTCTCACCGACCTGGCGACGCGGGGCCAGGTGTCGGCCGGCACGCAGAATCAGGCGCTGGCGGCACTGCTGTTC
CTGTATCGCGAGATCCTGGGCCTGGAGTTGCCCTGGATGGAGAACCTGGTGCGCGCCAAGCGACCGCGGCGCATTCCAGT
GGTGCTCTCGGTCGAGGAGGTGGCGCGCCTGCTGACGATGCTGGAGGGGGCGTGTCGGCTGATGGCGGGGCTGCTCTACG
GCAGCGGGATGCGGTTGCTGGAATGCCTGCGGTTGCGGATCAAGGATGTGGACATGGTGCGTTGCGAGATCGTGGTGCGC
GACGGAAAAGGCGGCAAGGATCGGCGGGTGCCGCTGCCGCGCAGCCTGCGAGGGGAATTAATGCAGCAGCGCGAGCGGGC
GCTGCTGCTGCATGCCGCTGATCTCGCCGAGGGAGCAGGACAGGTGTTCCTGCCGCATGCGTTGGCGCGCAAGTATCCCT
CGGCCGATGTCGAGCCCGGCTGGCAGTATCTGTTCCCCGCCGCGCGTCGATCGGTGGATCCGCGCAGTGGCCGAGTTGGT
CGGCATCACGTATCGGAGGAGATCCTCCAGCGTGCGGTACAGGCGGCACGGCGCCGTGCGGGGATCGACAAGCCGGCGAC
CTGCCACACCCTGCGGCATGCGTTCGCCACGCATCTGCTGGAGGCCGGCCACGATATCCGCACTGTGCAGGAGCTGTTGG
GCCACAAGGATGTGGCAACCACGCAGATCTACACGCATGTGCTGGGGCGCGGAGCGTCGGCGGTGCGCAGCCCGCTGGAT
GGGCTGCATCTCAGCGGTGGGTGA

Protein sequence : 
MTRLTPKLLDQVRGRLRLRHYSLRTEQAYVGWIRRFILANGKRHPAQMGQAEVEAFLTDLATRGQVSAGTQNQALAALLF
LYREILGLELPWMENLVRAKRPRRIPVVLSVEEVARLLTMLEGACRLMAGLLYGSGMRLLECLRLRIKDVDMVRCEIVVR
DGKGGKDRRVPLPRSLRGELMQQRERALLLHAADLAEGAGQVFLPHALARKYPSADVEPGWQYLFPAARRSVDPRSGRVG
RHHVSEEILQRAVQAARRRAGIDKPATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHVLGRGASAVRSPLD
GLHLSGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-75 56
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-74 56
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 4e-75 56
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-75 56
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-74 56
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 4e-75 56
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-75 56
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-74 56
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-75 56
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-74 56
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-74 56
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-75 56
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 7e-75 56
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-74 56
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-75 56
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 7e-75 56
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-74 56
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 9e-75 56
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-75 56
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-75 56
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-74 56
intI YP_001844881.1 integrase Not tested AbaR20 Protein 4e-75 56
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-75 56
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-74 56
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 4e-75 56
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-56 55
int1 YP_005160012.1 integrase Not tested Not named Protein 1e-60 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xerD1 YP_001901775.1 tyrosine recombinase VFG1028 Protein 1e-74 56