|
Name : hrpF (xccb100_3088) Accession : YP_001904493.1 Strain : Xanthomonas campestris B100 Genome accession: NC_010688 Putative virulence/resistance : Virulence Product : type III secretion system host membrane insertion protein Function : - COG functional category : - COG ID : - EC number : - Position : 3521424 - 3524189 bp Length : 2766 bp Strand : - Note : - DNA sequence : ATGTCGCTCAACACGCTTTCGACCGGGAGTACCGCCGGTCTGTTTCTACCTCTGACGGATGACGCGTCGTCCCCGGGGCT GCTCGGATCCGATTCGGCCATGAATGACTCCGATCTGTTGCTGGCGATGGACAACCTGTTTCTGCAGCAGATTTACCGTT TGATTGCCGCCACCTACGGCAATACGTCGCTCAATGGGCCAGGCAGTGGTATTCCGGGGCTTGACACGCCTTCAGCAGAC GACCTTCAAGCCAGCCAGCCGATTGAGAAACGGACCTCCTGGCCGACGCTATCGGCTCCGTTCAATGCCAAGGACATCAA GGGATCCAGGTTGCCGCCTGCGGTGGATGGGTCATCGGTGACCTGGGAGGGCGGCACGCTCACCCCATCGGAGCTTCAGA TTGTTTCGACACTCAATCAGCACAAAGACAAGACGCCGCTGGAGTTCGCAAAACTCGACGACAAGATCAATGATCCATCT ACACCTCCGGATCTGAAGAGTGCGCTGCAAGGCTTGCAGAAAGATCCGCGTCTTTTCTTCGCCATCGGTTCGCAGGGCGA CGGCAAATGCGGCGGCAAGATCAAGGCGGGTGATTTGTGGGATTTTGCAGACCACCATCAACAGGTGACCGCTCTGGGCG GGAAGAATGCCGAGTTCAATCCTAAAAACATCAAGGGAGCGACACCGCCTCCTGCCGCAGAAGGTTCGTCGGTAACCTGG GACGGCGGCACGCTGACGCAATCCCAGCTTGAGATCGTCTCTACGCTCAATCAGCATCGCGACATGATGCCGATCGAGTT CGCCAAGCTCGATGAAAAGATCAACGACCCAGCCACTCCGCCCGACCTGAAAAAAGCGCTGCAGGGCCTGCAACAGGATC CTGGCCTGTTCTTTGCGATGGCGTCTCAGGGTCACGGCAAGCACCACCACGACGACCAGGGCAAGTGCAATGGCAAGCTC ATCGCCGACAATCTTTACGACTTCGCCGACCGCCATCCGCAGGTGACGGCGCAGGGCGGCAAGAACGCGACCTACAATCC CGAAAAAATGAAGGGGCGCGACCTGCCGCCGCCGGTGGACGGCTCTTCGGTCACGTGGGATGGCGGGACGCTCACCCAGA ACGAATTGGAGATCGTCGCCACACTTAATCGCCACAAGGACAAGTGCCCAGTCAAGTGGACAGATCTCGATGCAAAGTCG AAGGATCCCGCCATCCCGCCGGATCTGCAAAAAGCGTTTGCAGATCTACAGCAAGATCCAGCTCTTTTTCATGCAATTGG TGCGCAGGGTAGCAAAGGAAGTTGCGATGGAAAATTCACTGAAAAGGATCTCACACGCTTTTCAGTGCCCGAAAAACACG CACAGATCGCTCAATATGCCGAGCAGCAAGCAAAGGGCTACACGCAAAACTATGTGGCGTCTGACAGCCCCGACAAGACC GAGCCGACGGTCATGACCGAGAGTGACGCGATGCGTGAACTCTACCGCTACTCGGACTATCTGCCCAAGGATCTAAACCA GGACGCGTTCAAGCAATTGGTCGAAGGCGACAGCACGACCAAGAAGAGCCCGCCGCAGGTCATTGCCGCCGCACAGTATT TTCGTGAGCATCCCGACCAGTGGAAAGCGCTGGCTGGCGACAAAGAGTCGATGAGCACGGCAGATTTCCTGCAGAAATCT ACATCAGAGATGCACCTGACCGCGCCCGAACTGAAAACGCTGGACACCATCAATAGCCACCAGGAAGCGTTCTTCGGCGA CGGCAAAGAGGTAACGCGCGACAAGCTCGACACGATTGTCAAGGATGATAAAGCCGACCCCGCAGTGCGCGACGCGGCCA AGCAACTTTTGGGCGACCCGCTACTGTTCGGCTTGTTGAACAACGCGATCACCGGCTACAAGAAGCCCCACAGCTTCTTC GGTGGTGGCCATGTCGTCGACTCGGGAAAGATCAGCAACAAAGATTTTCAGCAGTTCTACGAGCACATGACGGCGGTCAA CAAAACCCTGGATACACCGCCCACGCATGCAGCCACATCGCCCGAGCAAAAGAAGGCCGTCGCGGACATGCTGATGGGAA AAGCCGATCAGCCCGAGATCAAGAGGAAAAAACACGATGTCGGTACCTTCAGCAAGGGATTGCATGAGTTTCTCAAGTGG GACAGCAAGATCCTGGATGGGATTTCCGTAGCACTTAGTGCAATGAACGGCATTCCCCTGATCGGCGAGGTTGCCGATGC AGCAGCGCTAGCATTTGAGAGCGAAGCGCAGGCAGCACAGGTAATTGATACCGCACTGCAAGGTGGCAACCTGTCACTCG CGTGGAAACTCGCCGGCATCAATATGGCTGGAGCGGTGGTTGGCGCCGTTGGCGGACCCACGGCCAGACTCGCAGCCAAG GGAGCAGCCAAGGGGGTCGCCGAGGGCGCAGCCAAGGGAGCGACCCAGGGTACAACCAAGGGCGCGGCCAAAGGAGGCGG CAAGGGAGTAGCCGAGCGGGAAAAACCCCTTGATATTGCTAAAGGCTACATAATAGGTACTACCATCAACAGGCCGACTG AAATGTTGAAAACTCCCGTGTTGGCAGGCTTGCACTATGAAGAAGTGCGGCTGGATAAGGAGAAGAAAAAGGGCGAGATT CGCAAGAATCTGGAAGCGGCGGGCGGGGTGCCATTGGGGAAACAGTTTATTCCAAAAGCAATTGCCGACAACTTCGAGGC AGACACGAAAGAAAACCTCAGGCATGTGAGGGGGCGCCGCAAGTAA Protein sequence : MSLNTLSTGSTAGLFLPLTDDASSPGLLGSDSAMNDSDLLLAMDNLFLQQIYRLIAATYGNTSLNGPGSGIPGLDTPSAD DLQASQPIEKRTSWPTLSAPFNAKDIKGSRLPPAVDGSSVTWEGGTLTPSELQIVSTLNQHKDKTPLEFAKLDDKINDPS TPPDLKSALQGLQKDPRLFFAIGSQGDGKCGGKIKAGDLWDFADHHQQVTALGGKNAEFNPKNIKGATPPPAAEGSSVTW DGGTLTQSQLEIVSTLNQHRDMMPIEFAKLDEKINDPATPPDLKKALQGLQQDPGLFFAMASQGHGKHHHDDQGKCNGKL IADNLYDFADRHPQVTAQGGKNATYNPEKMKGRDLPPPVDGSSVTWDGGTLTQNELEIVATLNRHKDKCPVKWTDLDAKS KDPAIPPDLQKAFADLQQDPALFHAIGAQGSKGSCDGKFTEKDLTRFSVPEKHAQIAQYAEQQAKGYTQNYVASDSPDKT EPTVMTESDAMRELYRYSDYLPKDLNQDAFKQLVEGDSTTKKSPPQVIAAAQYFREHPDQWKALAGDKESMSTADFLQKS TSEMHLTAPELKTLDTINSHQEAFFGDGKEVTRDKLDTIVKDDKADPAVRDAAKQLLGDPLLFGLLNNAITGYKKPHSFF GGGHVVDSGKISNKDFQQFYEHMTAVNKTLDTPPTHAATSPEQKKAVADMLMGKADQPEIKRKKHDVGTFSKGLHEFLKW DSKILDGISVALSAMNGIPLIGEVADAAALAFESEAQAAQVIDTALQGGNLSLAWKLAGINMAGAVVGAVGGPTARLAAK GAAKGVAEGAAKGATQGTTKGAAKGGGKGVAEREKPLDIAKGYIIGTTINRPTEMLKTPVLAGLHYEEVRLDKEKKKGEI RKNLEAAGGVPLGKQFIPKAIADNFEADTKENLRHVRGRRK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3025 | YP_244093.1 | HrpF protein | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrpF | NP_636591.1 | HrpF protein | Virulence | Hrp PAI | Protein | 0.0 | 99 |
| hrpF | AAP34358.1 | HrpF | Virulence | Hrp PAI | Protein | 0.0 | 69 |
| hrpF | NP_640749.1 | HrpF protein | Virulence | Hrp PAI | Protein | 0.0 | 69 |
| hrpF | YP_362142.1 | HrpF protein | Virulence | Hrp PAI | Protein | 0.0 | 67 |
| hrpF | AAB86527.1 | HrpF | Virulence | Hrp PAI | Protein | 0.0 | 67 |
| hrpF | BAB07869.1 | HrpF | Virulence | Hrp PAI | Protein | 0.0 | 66 |
| hrpF | YP_198705.1 | HrpF protein | Virulence | Hrp PAI | Protein | 0.0 | 66 |
