Gene Information

Name : xccb100_3082 (xccb100_3082)
Accession : YP_001904487.1
Strain : Xanthomonas campestris B100
Genome accession: NC_010688
Putative virulence/resistance : Virulence
Product : HrcD protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3516697 - 3517644 bp
Length : 948 bp
Strand : +
Note : -

DNA sequence : 
ATGACCATGCAACTTCGCGTGCTGACGGGAATCCATGCCGGCGCACGATTAGATTTGCAGCCAGGCAGCTATACGTTAGG
CGCCGATCCCCAAGCCGAAATCCGGATCGAAGATTGGCCTGATTGTTCGCTCATCATCGAGGTGGATGCAGATGGTCAAG
TGTGTTATCGCAGCGAAGCGTTGCCAACGACAGCCTTTGTTGCGCTGCATCCGGTGCGCTTTGGTCCGTTGGTGCTCTGC
ATGGGCGACGCTGCGGCCGATTGGCCGGACGATGTTGCGCTGCTGGAGCAGCTACTGTCGCCCGCCGCGACACCGGCAGC
GCCTTCGCCACGCAGGTCCAGGCGCACTGCATTGCGTGCAGTGGTGGGCGCCATGCTAGCGCTGGCCGCCGCGGCACTGC
TGCCCTCCCTGCTCCCGGCGTTTCTCTCCGATGCGGCTCCCCCGCGCAGCCAGGACAACCAGCTTAATCAGGTGCGATTC
GTGCTGAAACGGCTGGGCTTGCGCGAAGCGCGCGTGGAGCAGGTCGGGTCGCGCGTGCGGGTCGAGGGCCTGGTGACAAG
CAGCGCGGATGCGGCACGCCTGCGCGCACAACTGCATCGGGATCAACATGCGGTCACGGTCGATGTGGTGGTGGTGGATG
AGGTATTGGCAACCCTGCGCGATACCTTGGCCGACCGCGACCTGAGCGTGCGTTACGACGGCCAGGGTGTTTTTTCGATT
GCCGGCAGCAGCGACAACGCCGAGCGTGCGACCCGACGCATCGCCGATCTACGCAGCGATCTGGGCCCGGAAATCCGCAC
ACTGCATGTGGAGATCACCCAGCAGGACCCGTCCGTGAAACCGCCCGCCAATTACGACGCCGCCCTGCTCGCCGACGGGC
TGCATTACGTCGAGACGCCGGACGGTACCAAGCACCTGACTTCCCTGCCGCAGCAAGCGGCGCCATGA

Protein sequence : 
MTMQLRVLTGIHAGARLDLQPGSYTLGADPQAEIRIEDWPDCSLIIEVDADGQVCYRSEALPTTAFVALHPVRFGPLVLC
MGDAAADWPDDVALLEQLLSPAATPAAPSPRRSRRTALRAVVGAMLALAAAALLPSLLPAFLSDAAPPRSQDNQLNQVRF
VLKRLGLREARVEQVGSRVRVEGLVTSSADAARLRAQLHRDQHAVTVDVVVVDEVLATLRDTLADRDLSVRYDGQGVFSI
AGSSDNAERATRRIADLRSDLGPEIRTLHVEITQQDPSVKPPANYDAALLADGLHYVETPDGTKHLTSLPQQAAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3019 YP_244087.1 HrpD5 protein Virulence Hrp PAI Protein 1e-104 100
hrpD5 NP_636597.1 HrpD5 protein Virulence Hrp PAI Protein 1e-104 100
unnamed AAP34352.1 HrpD5 Not tested Hrp PAI Protein 3e-83 68
hrpD5 NP_640754.1 HrpD5 protein Virulence Hrp PAI Protein 4e-83 68