Gene Information

Name : hrcV (xccb100_3076)
Accession : YP_001904481.1
Strain : Xanthomonas campestris B100
Genome accession: NC_010688
Putative virulence/resistance : Virulence
Product : type III secretory pathway component
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 3511388 - 3513310 bp
Length : 1923 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGTAACACGGTATTTTGCATACACCGGTGAAGTGGCGATCGCCGCCTTGGTGGTGGCGGTCATCGGCTTGATGAT
CCTGCCGCTGCCTACCCCGCTGATCGATACGCTGCTGGGCATCAACATCACGCTGAGCGTGGTGTTGCTGATGGTCACGA
TGTATGTGCCCGACTCGATCTCGCTGTCGTCGTTTCCCTCGTTGCTGCTGTTCACCACGCTGCTGCGGCTGTCGTTGAAC
ATCGCATCGACGAAATCGATCCTGCTGCACGCCGAAGCCGGCCACATCATCGAGAGCTTCGGCGAGCTGGTGGTGGGCGG
CAATCTGGTGGTGGGCCTGGTGGTGTTCCTGATCATCACCACGGTGCAATTCATCGTGATCGCCAAAGGTTCCGAGCGCG
TTGCGGAAGTCGGCGCGCGCTTCACCCTGGATGCGATGCCGGGCAAGCAGATGAGCATCGACGCCGACCTGCGCGGCGGC
AATCTGACTGCAGACGAAGCACGCCGCAAACGCGCCCGGCTGGCCATCGAGAGTCAACTGCACGGCGGCATGGATGGCGC
CATGAAATTCGTCAAGGGCGATGCGATCGCCGGCCTGGTGATCACCATGGTCAACATCTTGGCCGGCATCGTGGTAGGCG
TGACCTACCACGGCATGAGCGCGGGCGAGGCCGCCAACCGCTTTGCGATCCTGTCGGTAGGCGATGCGATGGTGTCGCAG
ATCGCCTCGCTGCTGATCTCGGTGGCGGCCGGCGTCATGATCACCCGCGTCGCCAACGAGAATGAAACCAAGATCAGCTC
GCTCGGGCTCGACATCGGCCGCCAGCTCACCAGCAACGCACGTGCCTTGATGGCAGCGAGTGTGCTGCTGGCCTGCTTTG
CGTTCGTGCCGGGATTTCCGGCGCTGCTGTTCCTGCTGCTGGCAGCGGCGGTCGGTGCCGGGGGCTATACGATCTGGCGC
AAGCAACGCGACACCAGCGGGAGCGATCAGCCCGCACTGCCATCAACCAGCCGCAAAGGTGCCAAAGGCGATGCGCCGCA
CATCCGCAAGAGCGCCCCGGATTTCGCCTCGCCCTTGTCGATGCGGCTTTCGCCGCAACTGGCTGCACGGCTCGACCCGG
CGCTGCTGGATCAGGCGATCGAAAGCGAGCGGAGGCAATTGGTCGAGCTGCTGGGATTGCCGTTCCCGGGGATCGCGATA
TGGCAGAGCGAATCCCTGCAGGGCCTGCAGTACGAAGTGTTGATCCACGATGTGCCGGAAACCCGCAGCGCGTTGAGCGA
TACGGCGGACATGCAGAAAGCGCTGGCCCAACAAGCCATCGCACCGTTGCATGCACGCGCGCATCTGTTCGTCGGCATCC
AGGAGACGCAGTGGATGCTGGAACAGGTGGGCGCGGACTATCCCGGGCTGGTTGCAGAGGTCAACAAGGCCATGCCAGCC
CAACGCATCGCCGATGTGTTGCGACGGCTACTGGAAGAACGCGTCCCGGTGCGCAACATCAAGAGCATCCTGGAGAGCCT
GGTGGTGTGGGGACCGAAGGAAAAGGATCTGCTGATGCTGACCGAGTATGTGCGCTGCGATCTCGGCCGCTATCTTGCGC
ACACCGCGACCGCAGGCACCGGACAGCTGCCTGCGGTGATGCTCGACCACGCCGTGGAACAGTTGATCCGGCAGTCGATT
CGCGCCACACCGGCCGGCAATTTCCTGGCGCTGCCACCGGAGCAGGCCAATCAGCTGGTCGAGCAGGTGGAACGCATCGT
CGAAGATCAGGCGCGGCATCCACTGGCAGTGGTCGCCTCGATGGACGTGCGGCGTTATGTGCGCCGCATGATCGAGGCAC
GCCTGAACTGGCTGGAGGTGTATTCGTTCCAGGAACTGGGCGCAGAGGTGCAGCTGCAGCCGATCGGCAGAGTGGTGGCC
TGA

Protein sequence : 
MRVTRYFAYTGEVAIAALVVAVIGLMILPLPTPLIDTLLGINITLSVVLLMVTMYVPDSISLSSFPSLLLFTTLLRLSLN
IASTKSILLHAEAGHIIESFGELVVGGNLVVGLVVFLIITTVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDADLRGG
NLTADEARRKRARLAIESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGIVVGVTYHGMSAGEAANRFAILSVGDAMVSQ
IASLLISVAAGVMITRVANENETKISSLGLDIGRQLTSNARALMAASVLLACFAFVPGFPALLFLLLAAAVGAGGYTIWR
KQRDTSGSDQPALPSTSRKGAKGDAPHIRKSAPDFASPLSMRLSPQLAARLDPALLDQAIESERRQLVELLGLPFPGIAI
WQSESLQGLQYEVLIHDVPETRSALSDTADMQKALAQQAIAPLHARAHLFVGIQETQWMLEQVGADYPGLVAEVNKAMPA
QRIADVLRRLLEERVPVRNIKSILESLVVWGPKEKDLLMLTEYVRCDLGRYLAHTATAGTGQLPAVMLDHAVEQLIRQSI
RATPAGNFLALPPEQANQLVEQVERIVEDQARHPLAVVASMDVRRYVRRMIEARLNWLEVYSFQELGAEVQLQPIGRVVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 0.0 99
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 0.0 99
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 0.0 95
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 0.0 95
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 0.0 95
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 0.0 95
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 0.0 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcV YP_001904481.1 type III secretory pathway component VFG0064 Protein 3e-96 45
hrcV YP_001904481.1 type III secretory pathway component VFG0198 Protein 3e-84 43
hrcV YP_001904481.1 type III secretory pathway component VFG0384 Protein 8e-86 41