|
Name : xccb100_2433 (xccb100_2433) Accession : YP_001903838.1 Strain : Xanthomonas campestris B100 Genome accession: NC_010688 Putative virulence/resistance : Unknown Product : DNA/RNA helicase SNF2 Function : - COG functional category : K : Transcription COG ID : COG0553 EC number : - Position : 2826467 - 2828746 bp Length : 2280 bp Strand : + Note : - DNA sequence : ATGTCCCTCGATCTTGAATCTACTGCTGCACAAGCCACGCCCGTGCAGAGCGAACTGCTCGACGCGGAATCTTCCCCTTT GACCCTGAGCCTTCAGGATTTCGTTGGTGAGTTCGGCGACGAACTGCTCGACTCCCTCAATCGCGCCAACCCGCCGGTCT ATACGGGTCAGCCGCAAACGCGCCGTCAGCTCATCGTCGCCAGCCTCAAGCGCAAACTGTTTGAGGCCCAGGCGGAAGTC GTCCATGCCGCCGCCGAGTTGCTGATCGACCGTGGCGAACGCGCCGCGATCGTCAACGGCGAGATGGGTTGCGGCAAGAC GACCGTCGGCATCGCCACGGCCGCCGTTCTCAACGCCGAGGGCTACCGCCGCACCCTGGTTCTTTCGCCACCGCATCTGG TTTACAAGTGGCGGCGCGAGATCCAGGAGACAGTGGCCGGCGCCAAGGTCTGGGTACTCAACGGCCCCGACACGCTGGTC AAACTCATCAAACTGCGCGAGCAGTTGGGTGTGCAGCCCACGGGCCAGGAGTTCTTCGTCCTTGGGCGTGTGCGGATGCG GATGGGCTTCCACTGGCGGTCCGTCTTCACCCGGGGGCGCACCCGCCACGGCGACGTGGCAGCCTGCCCGGACTGCGGCC ATGTCATCACAGACCTCGACGGCGAGCCGGTCAATCCGATCGAACTCGACGCCGAGGAGTACCGCAGGAAGTGCAGCCAT TGCGCCGCACCCCTGTGGACGCTGATCCGCCCGAGAAGCCTGTCCGGTAGCGACCAGTCTTCGGCCGTCCTCAAAGCCTT GAAACGGATTCCCACGATCGGGGAAGTCACCGCGCAGAAGCTCATGAAACGCTTCGGTGATGGCTTCCTCGCCTCGATGT TGGGAGACAACGTGCATGAGTTCATCAACCTCATGGACGGCAACGGTGAGCTGGTGTTTTCCGACCGCCAAGCCACCCGC ATGGAACGGGCGATGGCGAACATGGAGTTCGGGTTTGGCGAGGGTGGCTACCAACCGTCCGAGTTCATCAAACGCTACCT GCCGCAAGGCACGTTCGACCTGCTCATCGCTGATGAAGCGCACGAGTACAAGAACGGCGGCAGTGCCCAGGGCCAGGCCA TGGGCGTGCTGGCGGCGAAGGCGCGCAAGACGCTGCTCCTCACCGGCACCTTGATGGGCGGCTACGGCGACGACCTGTTC TACCTGCTGTTCCGCGCCCTGCCTGGGCGGATGATCGAAGACGGTTACCGCCCGACCACCAGCGGCAGCATGGCCTCGGC CGCGATGGCGTTCATGAGGGACCACGGAGTCCTCAAGGATATTTATTCGGAAAGCACAGGTACGGCGCACAAGACCGCGA AAGGCTCGAAAGTCAGTGTCAGAACGGTCAAGGCCCCAGGTTTCGGCCCCAAGGGCGTGCTGCGCTGCATCCTGCCGTTC ACGGTCTTCCTCAAGCTCAAGGACATCGGTGGCAACGTCCTGCCTCCGTATGACGAGGAGTTCCGTGAAGTCGCGATGGA CACGGCACAAGTCGCGGCCTACCGCGACCTGGCGGGTCGGCTGACCGCAGAGCTGAAGCAGGCTCTGGCGCGACGCGATA CGACTTTGTTGGGGGTGGTCCTCAACGTACTGCTGGCCTGGCCGGATTGCTGCTTCCGGTCGGAGACCGTGTTACATCCG CGCACGCGCGACACCTTGGCGTTCGTCCCGGCTCAGTTCCACGAGTTCGAGATCAGCCCCAAGGAGCGTGAGCTGATCGA CATCTGCAAGCAGGAGAAGGCGCAGGGGCGCAAGGTCCTGACCTATACGGTCTATACCGGCAAGCGCGACACCACGTCAC GCCTGAAGGTGCTGCTGGAGCAGGAAGACTTCAAGGTGGCGGTGCTGCGCGCGAGCGTAGATGCCAGCCGCCGTGAAGAC TGGATCGCCGAGCAGTTGGACCGCGGCATCGATGTGCTCATCACCAACCCCGAACTCGTCAAGACGGGATTGGACCTGTT GGACTTCCCGACGATCGTGTTCATGCAGTCGGGCTACAACGTGTACTCGCTCCAGCAAGCGGCCCGCCGCTCCTGGCGCA TCGGGCAGAAAGAACCCGTGCGAGTGATCTATCTCGGCTACGCCGGCTCCTCGCAGATGACCTGCTTGGAGTTAATGGCC AAGAAGATCATGGTATCGCAGTCCACCTCGGGCGACGTGCCCGAATCGGGGCTGGATGTCCTGAACCAGGATGGTGATTC CGTCGAGGTCGCATTGGCCCGGCAACTGGTAACTGCGTGA Protein sequence : MSLDLESTAAQATPVQSELLDAESSPLTLSLQDFVGEFGDELLDSLNRANPPVYTGQPQTRRQLIVASLKRKLFEAQAEV VHAAAELLIDRGERAAIVNGEMGCGKTTVGIATAAVLNAEGYRRTLVLSPPHLVYKWRREIQETVAGAKVWVLNGPDTLV KLIKLREQLGVQPTGQEFFVLGRVRMRMGFHWRSVFTRGRTRHGDVAACPDCGHVITDLDGEPVNPIELDAEEYRRKCSH CAAPLWTLIRPRSLSGSDQSSAVLKALKRIPTIGEVTAQKLMKRFGDGFLASMLGDNVHEFINLMDGNGELVFSDRQATR MERAMANMEFGFGEGGYQPSEFIKRYLPQGTFDLLIADEAHEYKNGGSAQGQAMGVLAAKARKTLLLTGTLMGGYGDDLF YLLFRALPGRMIEDGYRPTTSGSMASAAMAFMRDHGVLKDIYSESTGTAHKTAKGSKVSVRTVKAPGFGPKGVLRCILPF TVFLKLKDIGGNVLPPYDEEFREVAMDTAQVAAYRDLAGRLTAELKQALARRDTTLLGVVLNVLLAWPDCCFRSETVLHP RTRDTLAFVPAQFHEFEISPKERELIDICKQEKAQGRKVLTYTVYTGKRDTTSRLKVLLEQEDFKVAVLRASVDASRRED WIAEQLDRGIDVLITNPELVKTGLDLLDFPTIVFMQSGYNVYSLQQAARRSWRIGQKEPVRVIYLGYAGSSQMTCLELMA KKIMVSQSTSGDVPESGLDVLNQDGDSVEVALARQLVTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF C71 | AAN62165.1 | conserved hypothetical plasmid protein | Not tested | PAGI-2(C) | Protein | 0.0 | 95 |
| ORF SG81 | AAN62302.1 | conserved hypothetical plasmid protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 88 |
| RL063 | AAP84188.1 | plasmid related protein | Not tested | PAPI-1 | Protein | 0.0 | 72 |
| unnamed | ABR13404.1 | putative helicase | Not tested | PAGI-5 | Protein | 0.0 | 72 |
| pph67 | CAI36108.1 | superfamily II DNA/RNA helicase | Not tested | PPHGI-1 | Protein | 0.0 | 71 |
| yea | AAW83099.1 | Yea | Not tested | GGI | Protein | 6e-170 | 50 |
