Gene Information

Name : xccb100_2220 (xccb100_2220)
Accession : YP_001903624.1
Strain : Xanthomonas campestris B100
Genome accession: NC_010688
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 2577644 - 2579020 bp
Length : 1377 bp
Strand : -
Note : -

DNA sequence :
GTGAGCGCCTTGTTGGGAGCCACCCCGGCCGATTGGCTGGATGCGCGCAATCTGCGCCTGGCCACCCGTCTGGGCGGGCT
GGGCCTGGACCCGGCCGCCGGCCGCACCCTGATCCGCGAAGGCATCCTGCGCCGCGCGGTGGGCCTGACCCTGGAAGCCA
CCGGCTGCGAAGCGCCGATGGGCGCCACCTGCAAGGTGGAAGTCGATGGCGGCTGGGTCGACGCCGAAGTGGTCGGTTTT
TCCGGCGAACGCACCTATCTGATGCCCAGCGCCGAACTGCACGGTCTGCTGCCCAACGCCCGCGTGGTGCCCTCGCGGCG
CCGCGGCGGCGTGGAAGTGGGCGAAGGCCTGCTCGGCCGCGTCATCGACAGCGACGGCACCCCGCTGGATGGCAAGGGCC
CGATCCGCGCCGAAGGCAGCGTGGGCATGGCCGGCGTGTCGATCAACCCGCTGGCGCGCGAACCCATCACCACCTCGCTG
GACGTGGGCGTGCGCGCCATCAACGCGATGCTGCCCATCGGCCGCGGCCAGCGCGTGGGCCTGTTCGCCGGCTCCGGCGT
CGGTAAATCGACGCTGCTCGGCATGATGACCCGCTTCACCTCCGCCGACGTCATCGTGGTGGGGCTGATCGGCGAACGTG
GCCGCGAAGTGCGCGACTTCGTCGAAACCACCCTGGGCGAGGAAGGCCTGCGCCGCGCCGTGGTCGTGGCCGCCCCGGCC
GACCGCCCGCCGCTGGCCCGCCTGCACGGCGCCTACCGCGCCACCGCGATTGCGGAATGGTTCCGCGACCAAGGCTTGAA
CGTACTACTGCTGATGGATTCGCTGACCCGCTTTGCGCAGGCGCAGCGCGAGATCGGCCTGTCGGTCGGCGAGCCGCCCA
CCACCCGCGGCTACCCACCGTCGGTGTTCGCCAAATTGCCGGCGCTGGTGGAACGTGCCGGCAACGGCGCCAAGGGCCGC
GGCTCGATCACCGCCTTCTACACCGTGCTGACCGAAGGCGACGACCCGCAGGACCCGATCGCCGACGCCGCCCGCGCCAT
CCTGGACGGCCACATCCTGCTTTCGCGCCGGGTTGCCGACAGCGGCCTGTACCCGGCCATCGACCTGGAATCCTCGGTCA
GCCGCGTGGTGCAGGACATTGCCGACGACACCTGGCGCCTGCGCATCCGCAAGCTCAAGCGCCTGCTGTCGGCCTACACC
GCCAACCGCGACCTGATCGCCATCGGCGCCTACCAGCGCGGCAGCGACCCGGCCACCGACGAAGCGTTGGCGCGCTGGCC
GGAAATTGTCGACTTCCTTGGCCAGGACGTGCACAAGGCGTCCGATCTGACCGACAGCCTGTCCGCGCTGCAGCGGCTGG
TGGAACCAGAGAACTAA

Protein sequence :
MSALLGATPADWLDARNLRLATRLGGLGLDPAAGRTLIREGILRRAVGLTLEATGCEAPMGATCKVEVDGGWVDAEVVGF
SGERTYLMPSAELHGLLPNARVVPSRRRGGVEVGEGLLGRVIDSDGTPLDGKGPIRAEGSVGMAGVSINPLAREPITTSL
DVGVRAINAMLPIGRGQRVGLFAGSGVGKSTLLGMMTRFTSADVIVVGLIGERGREVRDFVETTLGEEGLRRAVVVAAPA
DRPPLARLHGAYRATAIAEWFRDQGLNVLLLMDSLTRFAQAQREIGLSVGEPPTTRGYPPSVFAKLPALVERAGNGAKGR
GSITAFYTVLTEGDDPQDPIADAARAILDGHILLSRRVADSGLYPAIDLESSVSRVVQDIADDTWRLRIRKLKRLLSAYT
ANRDLIAIGAYQRGSDPATDEALARWPEIVDFLGQDVHKASDLTDSLSALQRLVEPEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-69 50
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-69 50
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-71 50
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-71 50
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-71 50
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-65 50
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-70 49
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-70 49
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-71 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-71 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-59 49
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-59 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 3e-58 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 7e-59 49
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-58 49
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-55 45
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 7e-55 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-60 45
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-51 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-55 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-55 45
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 4e-55 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-55 45
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 6e-55 45
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 6e-56 44
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-48 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 2e-48 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-48 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-48 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG1254 Protein 7e-99 60
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG2499 Protein 7e-94 58
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG2331 Protein 2e-88 57
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG0192 Protein 7e-66 51
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG0390 Protein 2e-67 50
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG0515 Protein 4e-59 49
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG0048 Protein 2e-67 48
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG2144 Protein 1e-68 46
xccb100_2220 YP_001903624.1 flagellum-specific ATP synthase VFG0555 Protein 7e-49 42