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Name : lysS (xccb100_2141) Accession : YP_001903545.1 Strain : Xanthomonas campestris B100 Genome accession: NC_010688 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2476766 - 2478283 bp Length : 1518 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACCGAACAGACCCCCACGCCGCAGCTCCCCGCCGACGAGAACAGCCTCATCGCCGAGCGGCGCGCGAAACTGGGCGC GTTGCGCGGCCAGGGCATCGCCTATCCGAACGATTTCGTGCGCACCCACTTTGCCGGCGATCTGCAGGCCGAGTTCGCCG AGGCCGAAACCTGGACTGCCGAAGCGCTGGAAGCAGCCGACCGCAGCGTCAAGCTGGCGGGCCGGTTGATGGCCAAGCGG GTGATGGGCAAGGCCAGCTTCGCGCAGATCCAGGACGAGTCCGGGCGCGTGCAGTTGTTCCTGCAGGGCAATGTGCTGGG CGATGCCTACACCGCCTTCAAGGGTTGGGACGTGGGCGACATCGTGGCGGTGGAGGGCGGGCTGACCCGTACCAAGACCG GCGAGCTGTCGGTCAAGGCCAGTGCGCTGCGTTTGCTGACCAAGTCGCTGCGTCCGCTGCCGGACAAGTGGCATGGCCTG TCGGACGTGGAGCAGCGCTATCGCCAGCGCTATGTGGACCTGATCGTGACCCCGGAAGCGCGCGAGGTCTTCATCAAGCG CTCCAAGATCATCCGCGCCATCCGCGCCTGGCTGGACGCGCGCCGCTTCCTGGAAGTGGAAACGCCGATGATGCATTACA TCCCCGGCGGCGCCACTGCCAAGCCGTTCACCACCCACCACAACGCACTGGATCTGGACCTGTACCTGCGCGTGGCCCCG GAGCTGTACCTCAAGCGGCTGGTGGTCGGTGGGCTGGAGCGCGTCTACGAGATCAACCGCAATTTCCGCAACGAAGGCGT GTCGACCCGGCACAACCCCGAGTTCACCATGCTCGAGCTCTACGAGGCTTATGCCACGTACCACGAGATCATGGATCTGA CCGAGCAGGTGATCCGCGACACCGCCCAGGGCGTACTCGGCACCACCCAGGTCAGCTGGGACGGCGCCGACATTGATTTG GCGCCGGCTTTCCGACGCTGGCGCATGGATGAGGCGGTGCGCCACCACAACCCGGAGATCAGCGCGGCCGATTGCACCGA CCGCGCGGCGCTGCTGCGCCATTGCGAGCGGCTCAAGATCAAGGTCAAGCCGTCCTACGGCTGGGGCAAGCTGCTGCTGG AAATCTTCGAGGCCACCGTCGAACACACGCTGGTGCAGCCGACTTTCATCACCGACCATCCGGTCGAGGTGTCGCCGCTG GCACGCGCCAGCGACACCGAGCCGGGGTATACCGACCGCTTCGAGCTCTTCATCAATGGCAAGGAGCTGGCCAACGGGTT CTCGGAGCTCAACGACCCGGAAGACCAGGCGGCGCGTTTCCAGGCCCAGGTGCAGGCGAAGGACGGCGGCGACGACGAAG CCATGCATTACGACGCCGATTACATCCGTGCCCTGGAGTACGGAATGGCGCCGACCGGCGGGCTGGGCATCGGTATCGAT CGGCTGGTGATGCTGCTGACCGGCAGTACCTCCATTCGTGACGTGCTGCTGTTCCCGTACATGCGCCCGGAAGCCTGA Protein sequence : MTEQTPTPQLPADENSLIAERRAKLGALRGQGIAYPNDFVRTHFAGDLQAEFAEAETWTAEALEAADRSVKLAGRLMAKR VMGKASFAQIQDESGRVQLFLQGNVLGDAYTAFKGWDVGDIVAVEGGLTRTKTGELSVKASALRLLTKSLRPLPDKWHGL SDVEQRYRQRYVDLIVTPEAREVFIKRSKIIRAIRAWLDARRFLEVETPMMHYIPGGATAKPFTTHHNALDLDLYLRVAP ELYLKRLVVGGLERVYEINRNFRNEGVSTRHNPEFTMLELYEAYATYHEIMDLTEQVIRDTAQGVLGTTQVSWDGADIDL APAFRRWRMDEAVRHHNPEISAADCTDRAALLRHCERLKIKVKPSYGWGKLLLEIFEATVEHTLVQPTFITDHPVEVSPL ARASDTEPGYTDRFELFINGKELANGFSELNDPEDQAARFQAQVQAKDGGDDEAMHYDADYIRALEYGMAPTGGLGIGID RLVMLLTGSTSIRDVLLFPYMRPEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-122 | 53 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 9e-75 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001903545.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-122 | 53 |
