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Name : kdsB (xccb100_2062) Accession : YP_001903467.1 Strain : Xanthomonas campestris B100 Genome accession: NC_010688 Putative virulence/resistance : Virulence Product : 3-deoxy-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 2399629 - 2400474 bp Length : 846 bp Strand : + Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS DNA sequence : ATGCAGCCTCCATCCTTTTCAACCAGCGAGGACACCGTGCAACCAGTTTCTGCAGCGTCTCCCATCGCGTCGGACGACGC GTCCAGCGCCTTCGTGGTGGCCGTACCGGCGCGCTATGCCTCCACCCGGTTGCCCGGCAAGCCGCTGCAGCTGATCGGCG ATCGCCCCATGATCCAGCACGTGGCCGACCGTGCGCTGGCGGCCGGTGCCCGCGAGGTGTGGGTGGCCACCGACGACGCG CGCATTGCCGAGGCCATCCAGGGCCTGGCCGGCGTGCGCGTGGCGATGACCAGCAGCGTGCATCTGTCCGGCACCGACCG GCTGGCCGAGTGCGCGCGGATTGCCGGCTGGGATGCGGCCACCTGTGTGGTGAACCTGCAGGGCGACGAACCGTTCGCAC CGGCTGCCGGCATTCGTGCAGTGGCCCAGGTGTTGCAGCGCTCCGGCGCGGAGATGGCCACGCTCGCCGCGCCGGTCGAC AGCGCGCACGACCTGTTTGATCCCAACGTCGTGAAGCTGGTGCGCAACGCCCATGGCGATGCGTTGTACTTCAGCCGTGC GCCGATTCCGTGGCATCGCGACAGTTTTGCTGGCCAGCGCGATGCGGTACCGGCCGGCAATCACTGGCTGCGGCATATCG GCATCTACGCCTACCGCGCTGGGTTTCTGCAGCAGTTCGCAGCCATGCCGCCGGGCACGCTGGAGCGCATCGAATCGCTG GAGCAGCTGCGTGTGCTGGAAGCCGGCTACCGCATCGCGGTGGCGCTGACGCCTGAGCAGTTCCCACCCGGCATCGATAC GCCGGAAGACCTGCAGCGCGCGCAAGCGCAATTGGCGTCTGCATGA Protein sequence : MQPPSFSTSEDTVQPVSAASPIASDDASSAFVVAVPARYASTRLPGKPLQLIGDRPMIQHVADRALAAGAREVWVATDDA RIAEAIQGLAGVRVAMTSSVHLSGTDRLAECARIAGWDAATCVVNLQGDEPFAPAAGIRAVAQVLQRSGAEMATLAAPVD SAHDLFDPNVVKLVRNAHGDALYFSRAPIPWHRDSFAGQRDAVPAGNHWLRHIGIYAYRAGFLQQFAAMPPGTLERIESL EQLRVLEAGYRIAVALTPEQFPPGIDTPEDLQRAQAQLASA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 3e-36 | 44 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 3e-36 | 44 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 3e-36 | 44 |
