Gene Information

Name : xccb100_1868 (xccb100_1868)
Accession : YP_001903273.1
Strain : Xanthomonas campestris B100
Genome accession: NC_010688
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2184226 - 2185455 bp
Length : 1230 bp
Strand : -
Note : -

DNA sequence :
ATGCCTCTCACCGATACCGCCATCCGTAGAGCGAAACCAGCCGCCACGCCCCAGAAGCTGCGCGACGGCAACGGCCTGTA
TCTGCTGCTGCGACCAGACGGCGCACGCTGGTGGCGCTACGACTACCGCCGCCCGGTCACCGGCAAACGCAACACCCTGT
CGTTCGGCACCTACCCGGAAGTGAGCCTCGCAGACGCCCGGGAGAGGCTGGCGGAAGCGCGCCGCCTAGTCGCGGCCAAG
ATCGACCCAGGAGAACAGCGGAAGGCCGTCAAAGCCGCTGGCGAGGCCGCTGCTGCGAACAGCTTCGAGGTCGTCGCCCG
CGAGTGGTTCGCCAAGCAGCAGAAGGAATGGAGTCCCCAGTACGCGGAAAAGATCATCCGCCGCTTGCAGAGCGACATTT
TTCCCTGGATCGGCAGCAGCCCTATCGCAGCCATTACCGCCCCGGAACTACTGAAGCACTTGGAGCGGATCGAGCAGCGA
GGTGCCATCGAGACAGCACACCGCGCTTTGCAGACCTGCGGCGCAGTCTTTCGATACGCGGTGCGTACTGGACGGGCCGA
AGCCGATCCGACGGGTGCACTCAAGGGAGCACTGACACCCTGGCGATCCATGCCGTTCGCTGCTGCCACCACCTCGGAGG
AAGCGACGACCGTGCTGCGGAAGATTGACATCAGCACCAGTCGGCCAGTGGTCAGGAGTGCCCTGCGACTGGCACCGTTG
CTGTTCGCCAGACCCGGCGAGCTTGTCCGCATGAGGTGGACGGAGCTGGACCTTGATGCCGGACAATGGCGCTACTTCGT
GACCAAGACCAAGCGCACTCATATTGCGGCCCTTTCGACTCAGGCAATAGAAATTCTGCGCGACCTGCATCCTCTCACAG
GGCGTGGCGAGTTCGTATTCCCTGGCGGACGCGACCCGCGCAAGCACATGTCTGGCAACGCCATTTTAGTAGCAGCGCGA
CGCTGCGGCATCGAGAAAGACGAAAGCACAATCCACGGCTTCCGGCACATGGCGAGCACGCTACTGAACGAAATGGGCCA
CTGGAACCCCGATGCAATCGAATCTGCGTTAACCCACAAGATGCCTGGAGTAAGAGGCATCTACAATCAAGCACAGTATT
TGGACGAACGCCGCAAGATGATGCAGTCTTGGGCGGACAACCTCGACACATTGAAAGCTGACGCTGCAAACAAGGTTGTT
CCCTTCAAGCACAGAGTGGCGCGTGCGTAA

Protein sequence :
MPLTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPEVSLADARERLAEARRLVAAK
IDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQYAEKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQR
GAIETAHRALQTCGAVFRYAVRTGRAEADPTGALKGALTPWRSMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAPL
LFARPGELVRMRWTELDLDAGQWRYFVTKTKRTHIAALSTQAIEILRDLHPLTGRGEFVFPGGRDPRKHMSGNAILVAAR
RCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESALTHKMPGVRGIYNQAQYLDERRKMMQSWADNLDTLKADAANKVV
PFKHRVARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-46 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-53 42
int CAC39282.1 integrase Not tested LPA Protein 1e-53 42
int AAD44730.1 Int Not tested SHI-2 Protein 2e-52 42
int ACU09430.1 integrase Not tested LEE Protein 5e-53 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-53 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-53 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-53 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-53 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-53 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-51 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-51 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-51 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
xccb100_1868 YP_001903273.1 hypothetical protein VFG0783 Protein 3e-53 42
xccb100_1868 YP_001903273.1 hypothetical protein VFG0598 Protein 1e-51 41